Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21560 and BPHYT_RS21565 are separated by 9 nucleotides BPHYT_RS21565 and BPHYT_RS21570 are separated by 376 nucleotides
BPHYT_RS21560: BPHYT_RS21560 - GntR family transcriptional regulator, at 395,907 to 397,322
_RS21560
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
BPHYT_RS21570: BPHYT_RS21570 - oxidoreductase, at 398,332 to 399,021
_RS21570
Position (kb) 397
398 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 396.354 kb on + strand, within BPHYT_RS21560 at 396.840 kb on + strand, within BPHYT_RS21560 at 396.888 kb on + strand, within BPHYT_RS21560 at 397.190 kb on + strand at 397.213 kb on - strand at 397.213 kb on - strand at 397.258 kb on + strand at 397.259 kb on - strand at 397.292 kb on + strand at 397.320 kb on + strand at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand at 398.389 kb on + strand at 398.390 kb on - strand at 398.495 kb on + strand, within BPHYT_RS21570 at 398.495 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.533 kb on + strand, within BPHYT_RS21570 at 398.534 kb on - strand, within BPHYT_RS21570 at 398.934 kb on + strand, within BPHYT_RS21570
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 396,354 + BPHYT_RS21560 0.32 -0.6 396,840 + BPHYT_RS21560 0.66 +0.8 396,888 + BPHYT_RS21560 0.69 +1.0 397,190 + -0.5 397,213 - +0.6 397,213 - +0.5 397,258 + -1.0 397,259 - -0.5 397,292 + -0.1 397,320 + -0.3 397,499 - BPHYT_RS21565 0.27 -0.5 397,534 + BPHYT_RS21565 0.32 +4.4 397,534 + BPHYT_RS21565 0.32 -1.2 397,534 + BPHYT_RS21565 0.32 -0.4 397,693 + BPHYT_RS21565 0.58 -0.8 397,732 + BPHYT_RS21565 0.64 +0.2 397,732 + BPHYT_RS21565 0.64 +0.3 397,733 - BPHYT_RS21565 0.64 -1.4 397,948 + -0.3 397,948 + -0.2 397,948 + +1.5 397,949 - +1.2 397,997 - +0.3 398,167 + +1.7 398,168 - -0.6 398,168 - +1.9 398,170 - +1.2 398,389 + -0.2 398,390 - +0.3 398,495 + BPHYT_RS21570 0.24 +0.3 398,495 + BPHYT_RS21570 0.24 -1.7 398,533 + BPHYT_RS21570 0.29 -1.4 398,533 + BPHYT_RS21570 0.29 +0.6 398,534 - BPHYT_RS21570 0.29 +0.3 398,934 + BPHYT_RS21570 0.87 -0.6
Or see this region's nucleotide sequence