Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19880 and BPHYT_RS19885 are separated by 72 nucleotides BPHYT_RS19885 and BPHYT_RS19890 are separated by 368 nucleotides BPHYT_RS19890 and BPHYT_RS19895 are separated by 47 nucleotides
BPHYT_RS19880: BPHYT_RS19880 - protein kinase, at 1,730 to 3,865
_RS19880
BPHYT_RS19885: BPHYT_RS19885 - hypothetical protein, at 3,938 to 5,911
_RS19885
BPHYT_RS19890: BPHYT_RS19890 - hypothetical protein, at 6,280 to 6,783
_RS19890
BPHYT_RS19895: BPHYT_RS19895 - rod shape-determining protein RodA, at 6,831 to 7,265
_RS19895
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -1
0
1
2
3 at 3.016 kb on + strand, within BPHYT_RS19880 at 3.527 kb on + strand, within BPHYT_RS19880 at 3.536 kb on + strand, within BPHYT_RS19880 at 3.554 kb on + strand, within BPHYT_RS19880 at 3.759 kb on - strand at 3.817 kb on + strand at 3.817 kb on + strand at 4.287 kb on + strand, within BPHYT_RS19885 at 4.510 kb on - strand, within BPHYT_RS19885 at 4.917 kb on + strand, within BPHYT_RS19885 at 5.202 kb on + strand, within BPHYT_RS19885 at 5.266 kb on + strand, within BPHYT_RS19885 at 5.330 kb on - strand, within BPHYT_RS19885 at 5.943 kb on - strand at 6.035 kb on - strand at 6.038 kb on - strand at 6.112 kb on + strand at 6.113 kb on - strand at 6.128 kb on + strand at 6.129 kb on - strand at 6.129 kb on - strand at 6.129 kb on - strand at 6.379 kb on - strand, within BPHYT_RS19890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,016 + BPHYT_RS19880 0.60 +0.9 3,527 + BPHYT_RS19880 0.84 -0.2 3,536 + BPHYT_RS19880 0.85 +1.2 3,554 + BPHYT_RS19880 0.85 -0.6 3,759 - +1.5 3,817 + -0.2 3,817 + +0.1 4,287 + BPHYT_RS19885 0.18 +0.6 4,510 - BPHYT_RS19885 0.29 -0.5 4,917 + BPHYT_RS19885 0.50 +0.6 5,202 + BPHYT_RS19885 0.64 +1.5 5,266 + BPHYT_RS19885 0.67 -0.7 5,330 - BPHYT_RS19885 0.71 -1.3 5,943 - +0.8 6,035 - +2.3 6,038 - +3.1 6,112 + +1.1 6,113 - +0.7 6,128 + -1.3 6,129 - -1.3 6,129 - +0.5 6,129 - -1.0 6,379 - BPHYT_RS19890 0.20 +2.1
Or see this region's nucleotide sequence