Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19760 and BPHYT_RS19765 are separated by 181 nucleotides BPHYT_RS19765 and BPHYT_RS19770 are separated by 32 nucleotides BPHYT_RS19770 and BPHYT_RS19775 are separated by 152 nucleotides
BPHYT_RS19760: BPHYT_RS19760 - AraC family transcriptional regulator, at 4,444,587 to 4,445,528
_RS19760
BPHYT_RS19765: BPHYT_RS19765 - AraC family transcriptional regulator, at 4,445,710 to 4,446,522
_RS19765
BPHYT_RS19770: BPHYT_RS19770 - ArsR family transcriptional regulator, at 4,446,555 to 4,447,082
_RS19770
BPHYT_RS19775: BPHYT_RS19775 - pyruvate dehydrogenase, at 4,447,235 to 4,449,988
_RS19775
Position (kb) 4445
4446
4447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4444.976 kb on - strand, within BPHYT_RS19760 at 4444.976 kb on - strand, within BPHYT_RS19760 at 4445.100 kb on - strand, within BPHYT_RS19760 at 4445.335 kb on + strand, within BPHYT_RS19760 at 4445.583 kb on + strand at 4445.583 kb on + strand at 4445.659 kb on + strand at 4445.776 kb on + strand at 4445.776 kb on + strand at 4445.776 kb on + strand at 4445.776 kb on + strand at 4445.777 kb on - strand at 4445.777 kb on - strand at 4446.175 kb on + strand, within BPHYT_RS19765 at 4446.175 kb on + strand, within BPHYT_RS19765 at 4446.175 kb on + strand, within BPHYT_RS19765 at 4446.175 kb on + strand, within BPHYT_RS19765 at 4446.176 kb on - strand, within BPHYT_RS19765 at 4446.176 kb on - strand, within BPHYT_RS19765 at 4446.176 kb on - strand, within BPHYT_RS19765 at 4446.176 kb on - strand, within BPHYT_RS19765 at 4446.176 kb on - strand, within BPHYT_RS19765 at 4446.194 kb on - strand, within BPHYT_RS19765 at 4446.396 kb on - strand, within BPHYT_RS19765 at 4446.477 kb on + strand at 4446.497 kb on - strand at 4446.520 kb on + strand at 4446.632 kb on - strand, within BPHYT_RS19770 at 4446.632 kb on - strand, within BPHYT_RS19770 at 4446.751 kb on + strand, within BPHYT_RS19770 at 4446.752 kb on - strand, within BPHYT_RS19770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,444,976 - BPHYT_RS19760 0.41 -0.8 4,444,976 - BPHYT_RS19760 0.41 -2.7 4,445,100 - BPHYT_RS19760 0.54 +0.0 4,445,335 + BPHYT_RS19760 0.79 +0.1 4,445,583 + +0.1 4,445,583 + +0.7 4,445,659 + -0.0 4,445,776 + -0.4 4,445,776 + -0.4 4,445,776 + -1.6 4,445,776 + +1.1 4,445,777 - +0.5 4,445,777 - +0.7 4,446,175 + BPHYT_RS19765 0.57 +1.0 4,446,175 + BPHYT_RS19765 0.57 -0.4 4,446,175 + BPHYT_RS19765 0.57 -0.9 4,446,175 + BPHYT_RS19765 0.57 -0.7 4,446,176 - BPHYT_RS19765 0.57 +1.5 4,446,176 - BPHYT_RS19765 0.57 -0.9 4,446,176 - BPHYT_RS19765 0.57 +1.2 4,446,176 - BPHYT_RS19765 0.57 +2.1 4,446,176 - BPHYT_RS19765 0.57 +0.8 4,446,194 - BPHYT_RS19765 0.60 -0.0 4,446,396 - BPHYT_RS19765 0.84 +0.1 4,446,477 + -2.4 4,446,497 - -2.2 4,446,520 + -1.4 4,446,632 - BPHYT_RS19770 0.15 +0.1 4,446,632 - BPHYT_RS19770 0.15 +1.4 4,446,751 + BPHYT_RS19770 0.37 -0.1 4,446,752 - BPHYT_RS19770 0.37 +1.6
Or see this region's nucleotide sequence