Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15545 and BPHYT_RS15550 overlap by 4 nucleotides BPHYT_RS15550 and BPHYT_RS15555 are separated by 168 nucleotides
BPHYT_RS15545: BPHYT_RS15545 - isoaspartyl peptidase, at 3,527,902 to 3,528,894
_RS15545
BPHYT_RS15550: BPHYT_RS15550 - transcriptional regulator, at 3,528,891 to 3,529,874
_RS15550
BPHYT_RS15555: BPHYT_RS15555 - MFS transporter, at 3,530,043 to 3,531,296
_RS15555
Position (kb) 3528
3529
3530 Strain fitness (log2 ratio) -1
0
1
2 at 3527.903 kb on + strand at 3527.909 kb on + strand at 3527.954 kb on + strand at 3527.955 kb on - strand at 3528.079 kb on + strand, within BPHYT_RS15545 at 3528.079 kb on + strand, within BPHYT_RS15545 at 3528.080 kb on - strand, within BPHYT_RS15545 at 3528.089 kb on + strand, within BPHYT_RS15545 at 3528.908 kb on + strand at 3529.765 kb on + strand, within BPHYT_RS15550 at 3529.766 kb on - strand, within BPHYT_RS15550 at 3529.766 kb on - strand, within BPHYT_RS15550 at 3530.215 kb on + strand, within BPHYT_RS15555 at 3530.215 kb on + strand, within BPHYT_RS15555 at 3530.216 kb on - strand, within BPHYT_RS15555 at 3530.216 kb on - strand, within BPHYT_RS15555 at 3530.382 kb on + strand, within BPHYT_RS15555 at 3530.383 kb on - strand, within BPHYT_RS15555 at 3530.495 kb on - strand, within BPHYT_RS15555 at 3530.552 kb on - strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.560 kb on + strand, within BPHYT_RS15555 at 3530.561 kb on - strand, within BPHYT_RS15555 at 3530.765 kb on - strand, within BPHYT_RS15555 at 3530.824 kb on + strand, within BPHYT_RS15555 at 3530.825 kb on - strand, within BPHYT_RS15555 at 3530.834 kb on + strand, within BPHYT_RS15555 at 3530.870 kb on - strand, within BPHYT_RS15555 at 3530.870 kb on - strand, within BPHYT_RS15555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,527,903 + +1.3 3,527,909 + -1.0 3,527,954 + +0.2 3,527,955 - -0.1 3,528,079 + BPHYT_RS15545 0.18 +0.5 3,528,079 + BPHYT_RS15545 0.18 +0.2 3,528,080 - BPHYT_RS15545 0.18 +1.5 3,528,089 + BPHYT_RS15545 0.19 +1.1 3,528,908 + +1.6 3,529,765 + BPHYT_RS15550 0.89 -0.7 3,529,766 - BPHYT_RS15550 0.89 -0.7 3,529,766 - BPHYT_RS15550 0.89 +0.5 3,530,215 + BPHYT_RS15555 0.14 -0.2 3,530,215 + BPHYT_RS15555 0.14 +1.1 3,530,216 - BPHYT_RS15555 0.14 +0.3 3,530,216 - BPHYT_RS15555 0.14 -0.3 3,530,382 + BPHYT_RS15555 0.27 +0.4 3,530,383 - BPHYT_RS15555 0.27 +1.0 3,530,495 - BPHYT_RS15555 0.36 +0.5 3,530,552 - BPHYT_RS15555 0.41 -0.1 3,530,560 + BPHYT_RS15555 0.41 +2.0 3,530,560 + BPHYT_RS15555 0.41 +0.4 3,530,560 + BPHYT_RS15555 0.41 +0.5 3,530,560 + BPHYT_RS15555 0.41 +0.5 3,530,560 + BPHYT_RS15555 0.41 +0.7 3,530,560 + BPHYT_RS15555 0.41 +0.9 3,530,561 - BPHYT_RS15555 0.41 +0.0 3,530,765 - BPHYT_RS15555 0.58 -0.4 3,530,824 + BPHYT_RS15555 0.62 +0.8 3,530,825 - BPHYT_RS15555 0.62 -0.4 3,530,834 + BPHYT_RS15555 0.63 +0.2 3,530,870 - BPHYT_RS15555 0.66 -0.2 3,530,870 - BPHYT_RS15555 0.66 -0.5
Or see this region's nucleotide sequence