Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01870

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01865 and BPHYT_RS01870 are separated by 108 nucleotidesBPHYT_RS01870 and BPHYT_RS01875 are separated by 284 nucleotides BPHYT_RS01865: BPHYT_RS01865 - major facilitator transporter, at 423,297 to 424,589 _RS01865 BPHYT_RS01870: BPHYT_RS01870 - 6-aminohexanoate-cyclic-dimer hydrolase, at 424,698 to 426,218 _RS01870 BPHYT_RS01875: BPHYT_RS01875 - carboxymethylenebutenolidase, at 426,503 to 427,201 _RS01875 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 423.900 kb on + strand, within BPHYT_RS01865at 423.901 kb on - strand, within BPHYT_RS01865at 424.047 kb on + strand, within BPHYT_RS01865at 424.047 kb on + strand, within BPHYT_RS01865at 424.048 kb on - strand, within BPHYT_RS01865at 424.063 kb on - strand, within BPHYT_RS01865at 424.063 kb on - strand, within BPHYT_RS01865at 424.101 kb on + strand, within BPHYT_RS01865at 424.223 kb on + strand, within BPHYT_RS01865at 424.224 kb on - strand, within BPHYT_RS01865at 424.239 kb on + strand, within BPHYT_RS01865at 424.240 kb on - strand, within BPHYT_RS01865at 424.314 kb on - strand, within BPHYT_RS01865at 424.327 kb on - strand, within BPHYT_RS01865at 424.329 kb on + strand, within BPHYT_RS01865at 424.401 kb on + strand, within BPHYT_RS01865at 424.402 kb on - strand, within BPHYT_RS01865at 424.491 kb on + strandat 424.492 kb on - strandat 424.492 kb on - strandat 424.495 kb on - strandat 424.699 kb on + strandat 424.700 kb on - strandat 424.700 kb on - strandat 424.844 kb on - strandat 425.321 kb on + strand, within BPHYT_RS01870at 425.321 kb on + strand, within BPHYT_RS01870at 425.322 kb on - strand, within BPHYT_RS01870at 425.322 kb on - strand, within BPHYT_RS01870at 425.413 kb on + strand, within BPHYT_RS01870at 425.420 kb on + strand, within BPHYT_RS01870at 425.694 kb on - strand, within BPHYT_RS01870at 425.792 kb on + strand, within BPHYT_RS01870at 425.792 kb on + strand, within BPHYT_RS01870at 425.793 kb on - strand, within BPHYT_RS01870at 425.794 kb on + strand, within BPHYT_RS01870at 425.794 kb on + strand, within BPHYT_RS01870at 425.795 kb on - strand, within BPHYT_RS01870at 426.070 kb on + strandat 426.168 kb on + strandat 426.169 kb on - strandat 426.361 kb on + strandat 426.370 kb on + strandat 426.370 kb on + strandat 426.371 kb on - strandat 426.504 kb on + strandat 426.567 kb on + strandat 426.567 kb on + strandat 426.568 kb on - strandat 426.612 kb on + strand, within BPHYT_RS01875at 426.613 kb on - strand, within BPHYT_RS01875at 426.772 kb on - strand, within BPHYT_RS01875at 426.772 kb on - strand, within BPHYT_RS01875at 426.813 kb on + strand, within BPHYT_RS01875at 426.813 kb on + strand, within BPHYT_RS01875at 426.975 kb on + strand, within BPHYT_RS01875at 426.975 kb on + strand, within BPHYT_RS01875at 427.070 kb on - strand, within BPHYT_RS01875at 427.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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423,900 + BPHYT_RS01865 0.47 +0.6
423,901 - BPHYT_RS01865 0.47 -0.2
424,047 + BPHYT_RS01865 0.58 -0.0
424,047 + BPHYT_RS01865 0.58 -0.6
424,048 - BPHYT_RS01865 0.58 -0.3
424,063 - BPHYT_RS01865 0.59 +1.4
424,063 - BPHYT_RS01865 0.59 +0.9
424,101 + BPHYT_RS01865 0.62 +3.2
424,223 + BPHYT_RS01865 0.72 +0.2
424,224 - BPHYT_RS01865 0.72 +0.3
424,239 + BPHYT_RS01865 0.73 -0.9
424,240 - BPHYT_RS01865 0.73 -0.1
424,314 - BPHYT_RS01865 0.79 +0.9
424,327 - BPHYT_RS01865 0.80 +0.7
424,329 + BPHYT_RS01865 0.80 -1.0
424,401 + BPHYT_RS01865 0.85 -0.6
424,402 - BPHYT_RS01865 0.85 -0.1
424,491 + +0.5
424,492 - +0.6
424,492 - -0.2
424,495 - +0.5
424,699 + +0.1
424,700 - -0.9
424,700 - -0.4
424,844 - -1.1
425,321 + BPHYT_RS01870 0.41 -0.8
425,321 + BPHYT_RS01870 0.41 +0.1
425,322 - BPHYT_RS01870 0.41 +0.8
425,322 - BPHYT_RS01870 0.41 -0.5
425,413 + BPHYT_RS01870 0.47 -1.6
425,420 + BPHYT_RS01870 0.47 -1.6
425,694 - BPHYT_RS01870 0.65 +0.3
425,792 + BPHYT_RS01870 0.72 +1.0
425,792 + BPHYT_RS01870 0.72 -0.6
425,793 - BPHYT_RS01870 0.72 +0.1
425,794 + BPHYT_RS01870 0.72 -0.2
425,794 + BPHYT_RS01870 0.72 -0.2
425,795 - BPHYT_RS01870 0.72 -0.5
426,070 + +0.2
426,168 + +0.2
426,169 - -0.3
426,361 + -0.4
426,370 + -0.2
426,370 + -0.4
426,371 - -0.2
426,504 + -0.2
426,567 + -0.5
426,567 + +1.4
426,568 - +0.2
426,612 + BPHYT_RS01875 0.16 -0.3
426,613 - BPHYT_RS01875 0.16 -0.6
426,772 - BPHYT_RS01875 0.38 -2.2
426,772 - BPHYT_RS01875 0.38 -0.7
426,813 + BPHYT_RS01875 0.44 -2.2
426,813 + BPHYT_RS01875 0.44 -0.3
426,975 + BPHYT_RS01875 0.68 -2.6
426,975 + BPHYT_RS01875 0.68 +0.5
427,070 - BPHYT_RS01875 0.81 +1.5
427,144 - -0.1

Or see this region's nucleotide sequence