Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00550 and BPHYT_RS00555 are separated by 772 nucleotides BPHYT_RS00555 and BPHYT_RS00560 are separated by 152 nucleotides
BPHYT_RS00550: BPHYT_RS00550 - excinuclease ABC subunit B, at 132,757 to 134,736
_RS00550
BPHYT_RS00555: BPHYT_RS00555 - hypothetical protein, at 135,509 to 135,910
_RS00555
BPHYT_RS00560: BPHYT_RS00560 - membrane protein, at 136,063 to 137,451
_RS00560
Position (kb) 135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.819 kb on + strand at 134.996 kb on + strand at 134.997 kb on - strand at 134.997 kb on - strand at 135.114 kb on - strand at 135.120 kb on + strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.459 kb on - strand at 135.463 kb on - strand at 135.526 kb on - strand at 135.558 kb on + strand, within BPHYT_RS00555 at 135.558 kb on + strand, within BPHYT_RS00555 at 135.559 kb on - strand, within BPHYT_RS00555 at 135.665 kb on - strand, within BPHYT_RS00555 at 135.681 kb on + strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.908 kb on + strand at 135.911 kb on + strand at 135.912 kb on - strand at 136.126 kb on - strand at 136.212 kb on + strand, within BPHYT_RS00560 at 136.212 kb on + strand, within BPHYT_RS00560 at 136.212 kb on + strand, within BPHYT_RS00560 at 136.218 kb on + strand, within BPHYT_RS00560 at 136.218 kb on + strand, within BPHYT_RS00560 at 136.219 kb on - strand, within BPHYT_RS00560 at 136.219 kb on - strand, within BPHYT_RS00560 at 136.222 kb on + strand, within BPHYT_RS00560 at 136.222 kb on + strand, within BPHYT_RS00560 at 136.360 kb on + strand, within BPHYT_RS00560 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.544 kb on + strand, within BPHYT_RS00560 at 136.545 kb on - strand, within BPHYT_RS00560 at 136.620 kb on + strand, within BPHYT_RS00560 at 136.805 kb on - strand, within BPHYT_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 134,819 + +1.1 134,996 + -0.9 134,997 - -0.1 134,997 - +2.4 135,114 - +0.9 135,120 + +0.3 135,121 - -0.9 135,121 - +1.1 135,121 - -1.7 135,121 - +0.8 135,124 + +0.6 135,124 + -0.7 135,124 + -0.8 135,125 - +1.3 135,125 - +0.4 135,125 - -0.4 135,125 - +0.3 135,459 - -0.7 135,463 - -0.4 135,526 - -0.2 135,558 + BPHYT_RS00555 0.12 -0.8 135,558 + BPHYT_RS00555 0.12 -1.5 135,559 - BPHYT_RS00555 0.12 -0.1 135,665 - BPHYT_RS00555 0.39 -1.8 135,681 + BPHYT_RS00555 0.43 -0.3 135,693 - BPHYT_RS00555 0.46 +0.8 135,693 - BPHYT_RS00555 0.46 -0.3 135,693 - BPHYT_RS00555 0.46 -0.2 135,908 + -1.0 135,911 + -1.7 135,912 - -1.7 136,126 - -0.1 136,212 + BPHYT_RS00560 0.11 -1.3 136,212 + BPHYT_RS00560 0.11 -0.1 136,212 + BPHYT_RS00560 0.11 -0.0 136,218 + BPHYT_RS00560 0.11 -0.8 136,218 + BPHYT_RS00560 0.11 -0.7 136,219 - BPHYT_RS00560 0.11 -1.2 136,219 - BPHYT_RS00560 0.11 -1.0 136,222 + BPHYT_RS00560 0.11 +1.2 136,222 + BPHYT_RS00560 0.11 -1.4 136,360 + BPHYT_RS00560 0.21 -1.0 136,544 + BPHYT_RS00560 0.35 +0.0 136,544 + BPHYT_RS00560 0.35 +1.9 136,545 - BPHYT_RS00560 0.35 +0.8 136,620 + BPHYT_RS00560 0.40 -0.6 136,805 - BPHYT_RS00560 0.53 -1.5
Or see this region's nucleotide sequence