Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36335 and BPHYT_RS36340 are separated by 629 nucleotides BPHYT_RS36340 and BPHYT_RS36345 are separated by 164 nucleotides
BPHYT_RS36335: BPHYT_RS36335 - hypothetical protein, at 79,725 to 80,474
_RS36335
BPHYT_RS36340: BPHYT_RS36340 - hypothetical protein, at 81,104 to 81,769
_RS36340
BPHYT_RS36345: BPHYT_RS36345 - hypothetical protein, at 81,934 to 82,860
_RS36345
Position (kb) 81
82 Strain fitness (log2 ratio) -1
0
1
2
3 at 80.149 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.155 kb on - strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.248 kb on + strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.249 kb on - strand, within BPHYT_RS36335 at 80.251 kb on - strand, within BPHYT_RS36335 at 80.573 kb on + strand at 80.879 kb on - strand at 80.995 kb on + strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 80.996 kb on - strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.149 kb on + strand at 81.150 kb on - strand at 81.312 kb on + strand, within BPHYT_RS36340 at 81.482 kb on + strand, within BPHYT_RS36340 at 81.601 kb on + strand, within BPHYT_RS36340 at 81.726 kb on - strand at 81.726 kb on - strand at 81.990 kb on - strand at 81.990 kb on - strand at 82.259 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.457 kb on - strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.500 kb on + strand, within BPHYT_RS36345 at 82.501 kb on - strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.678 kb on + strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.679 kb on - strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345 at 82.681 kb on + strand, within BPHYT_RS36345
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 80,149 - BPHYT_RS36335 0.57 -0.2 80,155 - BPHYT_RS36335 0.57 +1.0 80,155 - BPHYT_RS36335 0.57 -0.6 80,248 + BPHYT_RS36335 0.70 +3.4 80,248 + BPHYT_RS36335 0.70 -0.1 80,248 + BPHYT_RS36335 0.70 +0.7 80,249 - BPHYT_RS36335 0.70 +0.1 80,249 - BPHYT_RS36335 0.70 +0.5 80,249 - BPHYT_RS36335 0.70 -1.2 80,251 - BPHYT_RS36335 0.70 -0.5 80,573 + -0.2 80,879 - -0.0 80,995 + +0.8 80,996 - -0.6 80,996 - -0.2 80,996 - +0.6 80,996 - -0.8 80,996 - -0.4 81,149 + +0.2 81,149 + +0.1 81,149 + +0.0 81,149 + +1.2 81,149 + -0.7 81,150 - +0.6 81,312 + BPHYT_RS36340 0.31 -1.4 81,482 + BPHYT_RS36340 0.57 -0.7 81,601 + BPHYT_RS36340 0.75 +0.2 81,726 - -0.2 81,726 - +0.7 81,990 - +0.8 81,990 - +1.1 82,259 - BPHYT_RS36345 0.35 -0.1 82,457 - BPHYT_RS36345 0.56 -1.0 82,457 - BPHYT_RS36345 0.56 +0.3 82,500 + BPHYT_RS36345 0.61 -0.4 82,500 + BPHYT_RS36345 0.61 -1.2 82,500 + BPHYT_RS36345 0.61 -1.2 82,501 - BPHYT_RS36345 0.61 -0.3 82,678 + BPHYT_RS36345 0.80 -0.4 82,678 + BPHYT_RS36345 0.80 +0.9 82,679 - BPHYT_RS36345 0.80 -0.6 82,679 - BPHYT_RS36345 0.80 -0.2 82,679 - BPHYT_RS36345 0.80 -0.2 82,679 - BPHYT_RS36345 0.80 +1.6 82,681 + BPHYT_RS36345 0.81 +0.8 82,681 + BPHYT_RS36345 0.81 -1.2
Or see this region's nucleotide sequence