Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36210 and BPHYT_RS36215 are separated by 127 nucleotides BPHYT_RS36215 and BPHYT_RS36220 are separated by 51 nucleotides BPHYT_RS36220 and BPHYT_RS36225 overlap by 23 nucleotides BPHYT_RS36225 and BPHYT_RS36230 are separated by 55 nucleotides BPHYT_RS36230 and BPHYT_RS36235 are separated by 691 nucleotides
BPHYT_RS36210: BPHYT_RS36210 - hypothetical protein, at 58,028 to 58,390
_RS36210
BPHYT_RS36215: BPHYT_RS36215 - hypothetical protein, at 58,518 to 59,036
_RS36215
BPHYT_RS36220: BPHYT_RS36220 - hypothetical protein, at 59,088 to 59,288
_RS36220
BPHYT_RS36225: BPHYT_RS36225 - hypothetical protein, at 59,266 to 59,538
_RS36225
BPHYT_RS36230: BPHYT_RS36230 - hypothetical protein, at 59,594 to 59,788
_RS36230
BPHYT_RS36235: BPHYT_RS36235 - hypothetical protein, at 60,480 to 60,860
_RS36235
Position (kb) 59
60 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.566 kb on - strand at 58.586 kb on - strand, within BPHYT_RS36215 at 58.774 kb on - strand, within BPHYT_RS36215 at 59.198 kb on + strand, within BPHYT_RS36220 at 59.329 kb on + strand, within BPHYT_RS36225 at 59.330 kb on - strand, within BPHYT_RS36225 at 59.362 kb on - strand, within BPHYT_RS36225 at 59.369 kb on - strand, within BPHYT_RS36225 at 59.392 kb on + strand, within BPHYT_RS36225 at 59.393 kb on - strand, within BPHYT_RS36225 at 59.393 kb on - strand, within BPHYT_RS36225 at 59.393 kb on - strand, within BPHYT_RS36225 at 59.393 kb on - strand, within BPHYT_RS36225 at 59.678 kb on + strand, within BPHYT_RS36230 at 59.678 kb on + strand, within BPHYT_RS36230 at 59.850 kb on - strand at 60.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 58,566 - -1.9 58,586 - BPHYT_RS36215 0.13 -0.1 58,774 - BPHYT_RS36215 0.49 -0.2 59,198 + BPHYT_RS36220 0.55 -1.4 59,329 + BPHYT_RS36225 0.23 +0.2 59,330 - BPHYT_RS36225 0.23 +2.1 59,362 - BPHYT_RS36225 0.35 +1.3 59,369 - BPHYT_RS36225 0.38 -0.4 59,392 + BPHYT_RS36225 0.46 -0.1 59,393 - BPHYT_RS36225 0.47 -2.3 59,393 - BPHYT_RS36225 0.47 +0.4 59,393 - BPHYT_RS36225 0.47 +0.2 59,393 - BPHYT_RS36225 0.47 +0.2 59,678 + BPHYT_RS36230 0.43 -0.1 59,678 + BPHYT_RS36230 0.43 +1.0 59,850 - +0.3 60,479 + -2.5
Or see this region's nucleotide sequence