Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35755 and BPHYT_RS35760 are separated by 202 nucleotides BPHYT_RS35760 and BPHYT_RS35765 are separated by 62 nucleotides
BPHYT_RS35755: BPHYT_RS35755 - LacI family transcription regulator, at 3,610,874 to 3,611,929
_RS35755
BPHYT_RS35760: BPHYT_RS35760 - ABC transporter substrate-binding protein, at 3,612,132 to 3,613,157
_RS35760
BPHYT_RS35765: BPHYT_RS35765 - ABC transporter permease, at 3,613,220 to 3,615,106
_RS35765
Position (kb) 3612
3613
3614 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 3611.142 kb on + strand, within BPHYT_RS35755 at 3611.142 kb on + strand, within BPHYT_RS35755 at 3611.143 kb on - strand, within BPHYT_RS35755 at 3611.191 kb on + strand, within BPHYT_RS35755 at 3611.192 kb on - strand, within BPHYT_RS35755 at 3611.193 kb on + strand, within BPHYT_RS35755 at 3611.194 kb on - strand, within BPHYT_RS35755 at 3611.194 kb on - strand, within BPHYT_RS35755 at 3611.415 kb on + strand, within BPHYT_RS35755 at 3611.415 kb on + strand, within BPHYT_RS35755 at 3611.438 kb on + strand, within BPHYT_RS35755 at 3611.439 kb on - strand, within BPHYT_RS35755 at 3611.490 kb on - strand, within BPHYT_RS35755 at 3611.602 kb on - strand, within BPHYT_RS35755 at 3611.659 kb on - strand at 3611.671 kb on + strand, within BPHYT_RS35755 at 3611.672 kb on - strand, within BPHYT_RS35755 at 3612.008 kb on + strand at 3612.020 kb on + strand at 3612.062 kb on + strand at 3612.111 kb on + strand at 3612.349 kb on + strand, within BPHYT_RS35760 at 3612.349 kb on + strand, within BPHYT_RS35760 at 3612.540 kb on + strand, within BPHYT_RS35760 at 3612.698 kb on + strand, within BPHYT_RS35760 at 3612.771 kb on - strand, within BPHYT_RS35760 at 3612.822 kb on + strand, within BPHYT_RS35760 at 3612.838 kb on - strand, within BPHYT_RS35760 at 3613.084 kb on - strand at 3613.084 kb on - strand at 3613.169 kb on - strand at 3613.395 kb on - strand at 3613.610 kb on + strand, within BPHYT_RS35765 at 3613.616 kb on + strand, within BPHYT_RS35765 at 3613.617 kb on - strand, within BPHYT_RS35765 at 3613.786 kb on - strand, within BPHYT_RS35765 at 3613.952 kb on - strand, within BPHYT_RS35765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,611,142 + BPHYT_RS35755 0.25 +0.6 3,611,142 + BPHYT_RS35755 0.25 +7.1 3,611,143 - BPHYT_RS35755 0.25 +0.5 3,611,191 + BPHYT_RS35755 0.30 -1.3 3,611,192 - BPHYT_RS35755 0.30 +0.6 3,611,193 + BPHYT_RS35755 0.30 -2.2 3,611,194 - BPHYT_RS35755 0.30 -1.5 3,611,194 - BPHYT_RS35755 0.30 +1.2 3,611,415 + BPHYT_RS35755 0.51 -0.2 3,611,415 + BPHYT_RS35755 0.51 -0.5 3,611,438 + BPHYT_RS35755 0.53 -1.3 3,611,439 - BPHYT_RS35755 0.54 -0.7 3,611,490 - BPHYT_RS35755 0.58 -0.5 3,611,602 - BPHYT_RS35755 0.69 +0.3 3,611,659 - +0.3 3,611,671 + BPHYT_RS35755 0.75 +0.7 3,611,672 - BPHYT_RS35755 0.76 -1.4 3,612,008 + -0.0 3,612,020 + -2.0 3,612,062 + -2.5 3,612,111 + +1.3 3,612,349 + BPHYT_RS35760 0.21 -0.9 3,612,349 + BPHYT_RS35760 0.21 -0.2 3,612,540 + BPHYT_RS35760 0.40 +1.3 3,612,698 + BPHYT_RS35760 0.55 +0.9 3,612,771 - BPHYT_RS35760 0.62 -0.9 3,612,822 + BPHYT_RS35760 0.67 +0.4 3,612,838 - BPHYT_RS35760 0.69 +0.9 3,613,084 - +0.0 3,613,084 - +2.1 3,613,169 - -0.4 3,613,395 - +3.3 3,613,610 + BPHYT_RS35765 0.21 -0.2 3,613,616 + BPHYT_RS35765 0.21 +1.4 3,613,617 - BPHYT_RS35765 0.21 +0.1 3,613,786 - BPHYT_RS35765 0.30 +0.1 3,613,952 - BPHYT_RS35765 0.39 -0.5
Or see this region's nucleotide sequence