Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34495 and BPHYT_RS34500 are separated by 156 nucleotides BPHYT_RS34500 and BPHYT_RS34505 are separated by 156 nucleotides BPHYT_RS34505 and BPHYT_RS34510 are separated by 307 nucleotides
BPHYT_RS34495: BPHYT_RS34495 - phenol degradation protein meta, at 3,346,866 to 3,347,801
_RS34495
BPHYT_RS34500: BPHYT_RS34500 - hypothetical protein, at 3,347,958 to 3,348,332
_RS34500
BPHYT_RS34505: BPHYT_RS34505 - hypothetical protein, at 3,348,489 to 3,349,061
_RS34505
BPHYT_RS34510: BPHYT_RS34510 - sodium:proton antiporter, at 3,349,369 to 3,350,955
_RS34510
Position (kb) 3348
3349
3350 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 3347.881 kb on - strand at 3347.881 kb on - strand at 3348.031 kb on - strand, within BPHYT_RS34500 at 3348.184 kb on - strand, within BPHYT_RS34500 at 3348.217 kb on - strand, within BPHYT_RS34500 at 3348.672 kb on - strand, within BPHYT_RS34505 at 3348.747 kb on + strand, within BPHYT_RS34505 at 3348.748 kb on - strand, within BPHYT_RS34505 at 3349.008 kb on + strand at 3349.110 kb on + strand at 3349.111 kb on - strand at 3349.111 kb on - strand at 3349.123 kb on + strand at 3349.127 kb on - strand at 3349.356 kb on - strand at 3349.582 kb on + strand, within BPHYT_RS34510 at 3349.993 kb on + strand, within BPHYT_RS34510 at 3350.050 kb on + strand, within BPHYT_RS34510 at 3350.050 kb on + strand, within BPHYT_RS34510 at 3350.051 kb on - strand, within BPHYT_RS34510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,347,881 - -0.4 3,347,881 - +0.2 3,348,031 - BPHYT_RS34500 0.19 +1.2 3,348,184 - BPHYT_RS34500 0.60 -0.8 3,348,217 - BPHYT_RS34500 0.69 -0.2 3,348,672 - BPHYT_RS34505 0.32 -0.8 3,348,747 + BPHYT_RS34505 0.45 -2.5 3,348,748 - BPHYT_RS34505 0.45 +1.3 3,349,008 + +5.4 3,349,110 + +0.5 3,349,111 - +1.0 3,349,111 - +0.6 3,349,123 + -0.4 3,349,127 - -0.5 3,349,356 - +1.3 3,349,582 + BPHYT_RS34510 0.13 -0.3 3,349,993 + BPHYT_RS34510 0.39 -0.1 3,350,050 + BPHYT_RS34510 0.43 -0.2 3,350,050 + BPHYT_RS34510 0.43 -0.6 3,350,051 - BPHYT_RS34510 0.43 +1.3
Or see this region's nucleotide sequence