Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27060 and BPHYT_RS27065 are separated by 162 nucleotides BPHYT_RS27065 and BPHYT_RS27070 are separated by 91 nucleotides BPHYT_RS27070 and BPHYT_RS27075 are separated by 66 nucleotides BPHYT_RS27075 and BPHYT_RS27080 overlap by 4 nucleotides
BPHYT_RS27060: BPHYT_RS27060 - photosystem reaction center subunit H, at 1,645,414 to 1,645,911
_RS27060
BPHYT_RS27065: BPHYT_RS27065 - hypothetical protein, at 1,646,074 to 1,646,463
_RS27065
BPHYT_RS27070: BPHYT_RS27070 - cation transporter, at 1,646,555 to 1,647,874
_RS27070
BPHYT_RS27075: BPHYT_RS27075 - membrane protein, at 1,647,941 to 1,648,510
_RS27075
BPHYT_RS27080: BPHYT_RS27080 - AraC family transcriptional regulator, at 1,648,507 to 1,649,478
_RS27080
Position (kb) 1646
1647
1648 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1645.792 kb on + strand, within BPHYT_RS27060 at 1645.795 kb on + strand, within BPHYT_RS27060 at 1645.796 kb on - strand, within BPHYT_RS27060 at 1646.367 kb on + strand, within BPHYT_RS27065 at 1646.603 kb on - strand at 1646.740 kb on + strand, within BPHYT_RS27070 at 1646.741 kb on - strand, within BPHYT_RS27070 at 1647.307 kb on + strand, within BPHYT_RS27070 at 1647.308 kb on - strand, within BPHYT_RS27070 at 1647.311 kb on + strand, within BPHYT_RS27070 at 1647.311 kb on + strand, within BPHYT_RS27070 at 1647.312 kb on - strand, within BPHYT_RS27070 at 1647.461 kb on + strand, within BPHYT_RS27070 at 1647.461 kb on + strand, within BPHYT_RS27070 at 1647.463 kb on + strand, within BPHYT_RS27070 at 1647.716 kb on + strand, within BPHYT_RS27070 at 1647.719 kb on + strand, within BPHYT_RS27070 at 1647.884 kb on + strand at 1648.166 kb on + strand at 1648.166 kb on + strand, within BPHYT_RS27075 at 1648.166 kb on + strand, within BPHYT_RS27075 at 1648.167 kb on - strand, within BPHYT_RS27075 at 1648.167 kb on - strand, within BPHYT_RS27075 at 1648.271 kb on + strand, within BPHYT_RS27075 at 1648.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,645,792 + BPHYT_RS27060 0.76 -0.6 1,645,795 + BPHYT_RS27060 0.77 -0.8 1,645,796 - BPHYT_RS27060 0.77 -0.6 1,646,367 + BPHYT_RS27065 0.75 -0.9 1,646,603 - +1.1 1,646,740 + BPHYT_RS27070 0.14 +1.2 1,646,741 - BPHYT_RS27070 0.14 +0.4 1,647,307 + BPHYT_RS27070 0.57 -1.9 1,647,308 - BPHYT_RS27070 0.57 -0.6 1,647,311 + BPHYT_RS27070 0.57 +2.2 1,647,311 + BPHYT_RS27070 0.57 -1.0 1,647,312 - BPHYT_RS27070 0.57 +0.6 1,647,461 + BPHYT_RS27070 0.69 -2.1 1,647,461 + BPHYT_RS27070 0.69 -0.2 1,647,463 + BPHYT_RS27070 0.69 +0.4 1,647,716 + BPHYT_RS27070 0.88 -0.7 1,647,719 + BPHYT_RS27070 0.88 +1.2 1,647,884 + -1.7 1,648,166 + -0.1 1,648,166 + BPHYT_RS27075 0.39 -0.9 1,648,166 + BPHYT_RS27075 0.39 +1.4 1,648,167 - BPHYT_RS27075 0.40 +1.0 1,648,167 - BPHYT_RS27075 0.40 -0.9 1,648,271 + BPHYT_RS27075 0.58 -0.8 1,648,508 + +1.2
Or see this region's nucleotide sequence