Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24800 and BPHYT_RS24805 are separated by 66 nucleotides BPHYT_RS24805 and BPHYT_RS24810 are separated by 32 nucleotides BPHYT_RS24810 and BPHYT_RS24815 are separated by 12 nucleotides
BPHYT_RS24800: BPHYT_RS24800 - peptidase M23B, at 1,131,090 to 1,132,544
_RS24800
BPHYT_RS24805: BPHYT_RS24805 - sensor histidine kinase, at 1,132,611 to 1,135,100
_RS24805
BPHYT_RS24810: BPHYT_RS24810 - hypothetical protein, at 1,135,133 to 1,135,741
_RS24810
BPHYT_RS24815: BPHYT_RS24815 - cob(II)yrinic acid a,c-diamide reductase, at 1,135,754 to 1,136,413
_RS24815
Position (kb) 1132
1133
1134
1135
1136 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1132.081 kb on - strand, within BPHYT_RS24800 at 1132.183 kb on - strand, within BPHYT_RS24800 at 1132.190 kb on - strand, within BPHYT_RS24800 at 1132.240 kb on - strand, within BPHYT_RS24800 at 1132.306 kb on - strand, within BPHYT_RS24800 at 1132.456 kb on - strand at 1132.459 kb on - strand at 1132.552 kb on - strand at 1132.625 kb on + strand at 1132.625 kb on + strand at 1132.626 kb on - strand at 1132.776 kb on + strand at 1132.777 kb on - strand at 1132.777 kb on - strand at 1132.941 kb on + strand, within BPHYT_RS24805 at 1132.942 kb on - strand, within BPHYT_RS24805 at 1133.013 kb on + strand, within BPHYT_RS24805 at 1133.013 kb on + strand, within BPHYT_RS24805 at 1133.014 kb on - strand, within BPHYT_RS24805 at 1133.014 kb on - strand, within BPHYT_RS24805 at 1133.014 kb on - strand, within BPHYT_RS24805 at 1133.349 kb on + strand, within BPHYT_RS24805 at 1133.449 kb on - strand, within BPHYT_RS24805 at 1133.502 kb on + strand, within BPHYT_RS24805 at 1133.502 kb on + strand, within BPHYT_RS24805 at 1133.503 kb on - strand, within BPHYT_RS24805 at 1133.503 kb on - strand, within BPHYT_RS24805 at 1133.758 kb on - strand, within BPHYT_RS24805 at 1133.800 kb on - strand, within BPHYT_RS24805 at 1133.900 kb on + strand, within BPHYT_RS24805 at 1134.564 kb on + strand, within BPHYT_RS24805 at 1134.564 kb on + strand, within BPHYT_RS24805 at 1134.760 kb on - strand, within BPHYT_RS24805 at 1134.760 kb on - strand, within BPHYT_RS24805 at 1135.104 kb on - strand at 1135.213 kb on + strand, within BPHYT_RS24810 at 1135.262 kb on + strand, within BPHYT_RS24810 at 1135.264 kb on + strand, within BPHYT_RS24810 at 1135.264 kb on + strand, within BPHYT_RS24810 at 1135.265 kb on - strand, within BPHYT_RS24810 at 1135.382 kb on + strand, within BPHYT_RS24810 at 1135.559 kb on + strand, within BPHYT_RS24810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,132,081 - BPHYT_RS24800 0.68 +5.1 1,132,183 - BPHYT_RS24800 0.75 -0.8 1,132,190 - BPHYT_RS24800 0.76 -0.3 1,132,240 - BPHYT_RS24800 0.79 -0.3 1,132,306 - BPHYT_RS24800 0.84 +1.0 1,132,456 - -0.4 1,132,459 - -0.2 1,132,552 - +0.2 1,132,625 + -0.1 1,132,625 + +0.1 1,132,626 - +0.3 1,132,776 + -0.0 1,132,777 - +1.4 1,132,777 - -0.1 1,132,941 + BPHYT_RS24805 0.13 -0.9 1,132,942 - BPHYT_RS24805 0.13 +0.5 1,133,013 + BPHYT_RS24805 0.16 -0.1 1,133,013 + BPHYT_RS24805 0.16 +0.3 1,133,014 - BPHYT_RS24805 0.16 -0.8 1,133,014 - BPHYT_RS24805 0.16 +1.0 1,133,014 - BPHYT_RS24805 0.16 -0.6 1,133,349 + BPHYT_RS24805 0.30 +2.0 1,133,449 - BPHYT_RS24805 0.34 +1.4 1,133,502 + BPHYT_RS24805 0.36 +0.3 1,133,502 + BPHYT_RS24805 0.36 +0.2 1,133,503 - BPHYT_RS24805 0.36 +0.5 1,133,503 - BPHYT_RS24805 0.36 +2.3 1,133,758 - BPHYT_RS24805 0.46 +0.6 1,133,800 - BPHYT_RS24805 0.48 -0.9 1,133,900 + BPHYT_RS24805 0.52 -0.4 1,134,564 + BPHYT_RS24805 0.78 +1.2 1,134,564 + BPHYT_RS24805 0.78 -0.7 1,134,760 - BPHYT_RS24805 0.86 +0.3 1,134,760 - BPHYT_RS24805 0.86 +0.3 1,135,104 - +0.8 1,135,213 + BPHYT_RS24810 0.13 -0.7 1,135,262 + BPHYT_RS24810 0.21 +0.6 1,135,264 + BPHYT_RS24810 0.22 +0.4 1,135,264 + BPHYT_RS24810 0.22 -0.5 1,135,265 - BPHYT_RS24810 0.22 -0.2 1,135,382 + BPHYT_RS24810 0.41 +0.4 1,135,559 + BPHYT_RS24810 0.70 -0.1
Or see this region's nucleotide sequence