Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23850 and BPHYT_RS23855 are separated by 387 nucleotides BPHYT_RS23855 and BPHYT_RS23860 are separated by 31 nucleotides BPHYT_RS23860 and BPHYT_RS23865 are separated by 156 nucleotides
BPHYT_RS23850: BPHYT_RS23850 - ser/threonine protein phosphatase, at 917,858 to 919,021
_RS23850
BPHYT_RS23855: BPHYT_RS23855 - hypothetical protein, at 919,409 to 919,738
_RS23855
BPHYT_RS23860: BPHYT_RS23860 - malonic semialdehyde reductase, at 919,770 to 920,354
_RS23860
BPHYT_RS23865: BPHYT_RS23865 - 2OG-Fe(II) oxygenase, at 920,511 to 921,122
_RS23865
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 918.925 kb on + strand at 918.926 kb on - strand at 918.963 kb on + strand at 918.963 kb on + strand at 918.963 kb on + strand at 918.964 kb on - strand at 919.021 kb on + strand at 919.163 kb on - strand at 919.245 kb on + strand at 919.295 kb on + strand at 919.306 kb on - strand at 919.318 kb on + strand at 919.318 kb on + strand at 919.408 kb on + strand at 919.408 kb on + strand at 919.409 kb on - strand at 919.409 kb on - strand at 919.583 kb on + strand, within BPHYT_RS23855 at 919.584 kb on - strand, within BPHYT_RS23855 at 919.584 kb on - strand, within BPHYT_RS23855 at 919.719 kb on - strand at 920.241 kb on + strand, within BPHYT_RS23860 at 920.241 kb on + strand, within BPHYT_RS23860 at 920.454 kb on + strand at 920.455 kb on - strand at 920.718 kb on + strand, within BPHYT_RS23865 at 920.719 kb on - strand, within BPHYT_RS23865 at 920.719 kb on - strand, within BPHYT_RS23865 at 920.725 kb on - strand, within BPHYT_RS23865 at 920.816 kb on + strand, within BPHYT_RS23865 at 921.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 918,925 + +1.8 918,926 - +0.0 918,963 + +0.4 918,963 + -0.3 918,963 + -0.8 918,964 - -2.0 919,021 + -0.4 919,163 - +1.3 919,245 + +0.8 919,295 + -1.0 919,306 - -1.4 919,318 + -1.0 919,318 + +0.2 919,408 + -0.9 919,408 + +0.9 919,409 - +1.3 919,409 - -1.2 919,583 + BPHYT_RS23855 0.53 -1.2 919,584 - BPHYT_RS23855 0.53 -0.1 919,584 - BPHYT_RS23855 0.53 -0.9 919,719 - +0.4 920,241 + BPHYT_RS23860 0.81 -0.8 920,241 + BPHYT_RS23860 0.81 -0.6 920,454 + -1.3 920,455 - +0.5 920,718 + BPHYT_RS23865 0.34 -0.6 920,719 - BPHYT_RS23865 0.34 +0.7 920,719 - BPHYT_RS23865 0.34 -0.5 920,725 - BPHYT_RS23865 0.35 -0.1 920,816 + BPHYT_RS23865 0.50 +0.6 921,190 - +1.5
Or see this region's nucleotide sequence