Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23755 and BPHYT_RS23760 overlap by 23 nucleotides BPHYT_RS23760 and BPHYT_RS23765 overlap by 11 nucleotides BPHYT_RS23765 and BPHYT_RS23770 are separated by 82 nucleotides
BPHYT_RS23755: BPHYT_RS23755 - phosphonate ABC transporter ATP-binding protein, at 896,723 to 897,823
_RS23755
BPHYT_RS23760: BPHYT_RS23760 - phosphonate ABC transporter permease, at 897,801 to 898,757
_RS23760
BPHYT_RS23765: BPHYT_RS23765 - phosphonate ABC transporter permease, at 898,747 to 899,610
_RS23765
BPHYT_RS23770: BPHYT_RS23770 - GntR family transcriptional regulator, at 899,693 to 900,427
_RS23770
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.056 kb on + strand, within BPHYT_RS23755 at 897.057 kb on - strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.309 kb on + strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.310 kb on - strand, within BPHYT_RS23755 at 897.474 kb on - strand, within BPHYT_RS23755 at 897.566 kb on + strand, within BPHYT_RS23755 at 897.669 kb on - strand, within BPHYT_RS23755 at 897.669 kb on - strand, within BPHYT_RS23755 at 898.047 kb on + strand, within BPHYT_RS23760 at 898.617 kb on + strand, within BPHYT_RS23760 at 898.618 kb on - strand, within BPHYT_RS23760 at 898.707 kb on + strand at 898.789 kb on - strand at 899.453 kb on - strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.662 kb on + strand at 899.662 kb on + strand at 899.663 kb on - strand at 899.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 897,056 + BPHYT_RS23755 0.30 -0.2 897,056 + BPHYT_RS23755 0.30 -0.1 897,056 + BPHYT_RS23755 0.30 -1.7 897,057 - BPHYT_RS23755 0.30 +1.2 897,309 + BPHYT_RS23755 0.53 -0.6 897,309 + BPHYT_RS23755 0.53 -2.1 897,310 - BPHYT_RS23755 0.53 -1.1 897,310 - BPHYT_RS23755 0.53 -0.5 897,474 - BPHYT_RS23755 0.68 +0.5 897,566 + BPHYT_RS23755 0.77 +0.1 897,669 - BPHYT_RS23755 0.86 +0.4 897,669 - BPHYT_RS23755 0.86 -1.2 898,047 + BPHYT_RS23760 0.26 -0.7 898,617 + BPHYT_RS23760 0.85 +0.4 898,618 - BPHYT_RS23760 0.85 -2.1 898,707 + -0.2 898,789 - -1.2 899,453 - BPHYT_RS23765 0.82 +0.1 899,512 + BPHYT_RS23765 0.89 -0.8 899,512 + BPHYT_RS23765 0.89 -1.9 899,512 + BPHYT_RS23765 0.89 +0.1 899,662 + -0.2 899,662 + -1.2 899,663 - -1.1 899,663 - -0.7
Or see this region's nucleotide sequence