Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23725 and BPHYT_RS23730 are separated by 261 nucleotides BPHYT_RS23730 and BPHYT_RS23735 are separated by 133 nucleotides
BPHYT_RS23725: BPHYT_RS23725 - hypothetical protein, at 890,038 to 891,024
_RS23725
BPHYT_RS23730: BPHYT_RS23730 - multidrug DMT transporter permease, at 891,286 to 892,158
_RS23730
BPHYT_RS23735: BPHYT_RS23735 - ABC transporter, at 892,292 to 893,851
_RS23735
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 890.342 kb on - strand, within BPHYT_RS23725 at 890.402 kb on - strand, within BPHYT_RS23725 at 890.449 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.818 kb on + strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.863 kb on - strand, within BPHYT_RS23725 at 891.371 kb on + strand at 891.372 kb on - strand at 891.932 kb on + strand, within BPHYT_RS23730 at 891.932 kb on + strand, within BPHYT_RS23730 at 891.959 kb on - strand, within BPHYT_RS23730 at 892.421 kb on - strand at 892.483 kb on + strand, within BPHYT_RS23735 at 892.484 kb on - strand, within BPHYT_RS23735 at 892.484 kb on - strand, within BPHYT_RS23735 at 892.565 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.579 kb on + strand, within BPHYT_RS23735 at 892.580 kb on - strand, within BPHYT_RS23735 at 892.588 kb on + strand, within BPHYT_RS23735 at 892.589 kb on - strand, within BPHYT_RS23735 at 892.851 kb on + strand, within BPHYT_RS23735 at 893.146 kb on - strand, within BPHYT_RS23735
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 890,342 - BPHYT_RS23725 0.31 -0.9 890,402 - BPHYT_RS23725 0.37 +1.0 890,449 + BPHYT_RS23725 0.42 +1.1 890,524 + BPHYT_RS23725 0.49 -1.0 890,524 + BPHYT_RS23725 0.49 -0.7 890,818 + BPHYT_RS23725 0.79 -0.1 890,840 - BPHYT_RS23725 0.81 -1.2 890,840 - BPHYT_RS23725 0.81 +0.9 890,863 - BPHYT_RS23725 0.84 -0.8 891,371 + -0.2 891,372 - -0.5 891,932 + BPHYT_RS23730 0.74 +0.2 891,932 + BPHYT_RS23730 0.74 -1.6 891,959 - BPHYT_RS23730 0.77 +0.6 892,421 - +1.4 892,483 + BPHYT_RS23735 0.12 -2.7 892,484 - BPHYT_RS23735 0.12 -0.8 892,484 - BPHYT_RS23735 0.12 +0.0 892,565 + BPHYT_RS23735 0.17 +0.8 892,579 + BPHYT_RS23735 0.18 -0.4 892,579 + BPHYT_RS23735 0.18 -1.2 892,579 + BPHYT_RS23735 0.18 -1.9 892,580 - BPHYT_RS23735 0.18 -1.8 892,588 + BPHYT_RS23735 0.19 +3.8 892,589 - BPHYT_RS23735 0.19 -0.6 892,851 + BPHYT_RS23735 0.36 -1.4 893,146 - BPHYT_RS23735 0.55 +0.6
Or see this region's nucleotide sequence