Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23095 and BPHYT_RS23100 are separated by 26 nucleotides BPHYT_RS23100 and BPHYT_RS23105 are separated by 81 nucleotides
BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359
_RS23095
BPHYT_RS23100: BPHYT_RS23100 - sugar ABC transporter substrate-binding protein, at 746,386 to 747,333
_RS23100
BPHYT_RS23105: BPHYT_RS23105 - DNA polymerase, at 747,415 to 749,790
_RS23105
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.508 kb on + strand, within BPHYT_RS23095 at 745.634 kb on + strand, within BPHYT_RS23095 at 745.868 kb on + strand, within BPHYT_RS23095 at 745.929 kb on - strand, within BPHYT_RS23095 at 746.186 kb on - strand, within BPHYT_RS23095 at 746.330 kb on + strand at 746.387 kb on + strand at 746.388 kb on - strand at 746.388 kb on - strand at 746.512 kb on + strand, within BPHYT_RS23100 at 746.513 kb on - strand, within BPHYT_RS23100 at 747.406 kb on - strand at 747.578 kb on + strand at 747.579 kb on - strand at 747.579 kb on - strand at 747.874 kb on - strand, within BPHYT_RS23105 at 747.876 kb on - strand, within BPHYT_RS23105 at 748.057 kb on - strand, within BPHYT_RS23105 at 748.145 kb on + strand, within BPHYT_RS23105 at 748.146 kb on - strand, within BPHYT_RS23105 at 748.147 kb on + strand, within BPHYT_RS23105 at 748.320 kb on + strand, within BPHYT_RS23105 at 748.321 kb on - strand, within BPHYT_RS23105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 745,508 + BPHYT_RS23095 0.31 +1.3 745,634 + BPHYT_RS23095 0.41 +0.7 745,868 + BPHYT_RS23095 0.60 +0.6 745,929 - BPHYT_RS23095 0.65 +0.5 746,186 - BPHYT_RS23095 0.86 +0.6 746,330 + +0.6 746,387 + +0.7 746,388 - +1.6 746,388 - +1.9 746,512 + BPHYT_RS23100 0.13 -2.2 746,513 - BPHYT_RS23100 0.13 +0.3 747,406 - +0.3 747,578 + +0.4 747,579 - -3.1 747,579 - -0.3 747,874 - BPHYT_RS23105 0.19 -0.2 747,876 - BPHYT_RS23105 0.19 -0.0 748,057 - BPHYT_RS23105 0.27 -0.2 748,145 + BPHYT_RS23105 0.31 +0.0 748,146 - BPHYT_RS23105 0.31 -1.6 748,147 + BPHYT_RS23105 0.31 -0.6 748,320 + BPHYT_RS23105 0.38 -0.5 748,321 - BPHYT_RS23105 0.38 -0.5
Or see this region's nucleotide sequence