Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22865

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22855 and BPHYT_RS22860 are separated by 126 nucleotidesBPHYT_RS22860 and BPHYT_RS22865 overlap by 4 nucleotidesBPHYT_RS22865 and BPHYT_RS22870 are separated by 30 nucleotides BPHYT_RS22855: BPHYT_RS22855 - aldehyde-activating protein, at 686,300 to 686,671 _RS22855 BPHYT_RS22860: BPHYT_RS22860 - chemotaxis protein CheY, at 686,798 to 687,538 _RS22860 BPHYT_RS22865: BPHYT_RS22865 - ATPase, at 687,535 to 688,860 _RS22865 BPHYT_RS22870: BPHYT_RS22870 - copper transporter, at 688,891 to 690,564 _RS22870 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 686.557 kb on + strand, within BPHYT_RS22855at 686.612 kb on + strand, within BPHYT_RS22855at 686.613 kb on - strand, within BPHYT_RS22855at 686.615 kb on - strand, within BPHYT_RS22855at 686.817 kb on + strandat 687.407 kb on - strand, within BPHYT_RS22860at 687.782 kb on - strand, within BPHYT_RS22865at 688.219 kb on - strand, within BPHYT_RS22865at 688.606 kb on - strand, within BPHYT_RS22865at 689.459 kb on + strand, within BPHYT_RS22870at 689.463 kb on - strand, within BPHYT_RS22870

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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686,557 + BPHYT_RS22855 0.69 -0.3
686,612 + BPHYT_RS22855 0.84 -0.3
686,613 - BPHYT_RS22855 0.84 -0.5
686,615 - BPHYT_RS22855 0.85 -0.1
686,817 + +3.8
687,407 - BPHYT_RS22860 0.82 -1.3
687,782 - BPHYT_RS22865 0.19 -1.9
688,219 - BPHYT_RS22865 0.52 -2.1
688,606 - BPHYT_RS22865 0.81 -0.0
689,459 + BPHYT_RS22870 0.34 +1.9
689,463 - BPHYT_RS22870 0.34 +1.3

Or see this region's nucleotide sequence