Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22525

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22520 and BPHYT_RS22525 are separated by 375 nucleotidesBPHYT_RS22525 and BPHYT_RS22530 are separated by 43 nucleotides BPHYT_RS22520: BPHYT_RS22520 - RND transporter, at 613,083 to 614,684 _RS22520 BPHYT_RS22525: BPHYT_RS22525 - dioxygenase, at 615,060 to 615,899 _RS22525 BPHYT_RS22530: BPHYT_RS22530 - N5,N10-methylene tetrahydromethanopterin reductase, at 615,943 to 617,349 _RS22530 Position (kb) 615 616Strain fitness (log2 ratio) -2 -1 0 1 2at 614.445 kb on + strand, within BPHYT_RS22520at 614.467 kb on - strand, within BPHYT_RS22520at 614.467 kb on - strand, within BPHYT_RS22520at 614.790 kb on + strandat 614.814 kb on - strandat 615.293 kb on + strand, within BPHYT_RS22525at 615.337 kb on - strand, within BPHYT_RS22525at 615.348 kb on - strand, within BPHYT_RS22525at 615.384 kb on + strand, within BPHYT_RS22525at 615.432 kb on + strand, within BPHYT_RS22525at 616.042 kb on + strandat 616.043 kb on - strandat 616.043 kb on - strandat 616.282 kb on + strand, within BPHYT_RS22530

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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614,445 + BPHYT_RS22520 0.85 -0.8
614,467 - BPHYT_RS22520 0.86 +1.8
614,467 - BPHYT_RS22520 0.86 -0.7
614,790 + -0.7
614,814 - -0.3
615,293 + BPHYT_RS22525 0.28 -0.7
615,337 - BPHYT_RS22525 0.33 +1.6
615,348 - BPHYT_RS22525 0.34 -2.6
615,384 + BPHYT_RS22525 0.39 -0.2
615,432 + BPHYT_RS22525 0.44 -0.7
616,042 + -2.6
616,043 - -0.5
616,043 - -0.3
616,282 + BPHYT_RS22530 0.24 -2.3

Or see this region's nucleotide sequence