Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22515 and BPHYT_RS22520 are separated by 13 nucleotides BPHYT_RS22520 and BPHYT_RS22525 are separated by 375 nucleotides
BPHYT_RS22515: BPHYT_RS22515 - multidrug efflux RND transporter permease subunit, at 609,884 to 613,069
_RS22515
BPHYT_RS22520: BPHYT_RS22520 - RND transporter, at 613,083 to 614,684
_RS22520
BPHYT_RS22525: BPHYT_RS22525 - dioxygenase, at 615,060 to 615,899
_RS22525
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1
2 at 612.209 kb on + strand, within BPHYT_RS22515 at 612.360 kb on - strand, within BPHYT_RS22515 at 612.368 kb on + strand, within BPHYT_RS22515 at 612.371 kb on - strand, within BPHYT_RS22515 at 612.498 kb on - strand, within BPHYT_RS22515 at 612.582 kb on - strand, within BPHYT_RS22515 at 612.980 kb on + strand at 612.981 kb on - strand at 613.043 kb on + strand at 613.720 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520 at 614.445 kb on + strand, within BPHYT_RS22520 at 614.467 kb on - strand, within BPHYT_RS22520 at 614.467 kb on - strand, within BPHYT_RS22520 at 614.790 kb on + strand at 614.814 kb on - strand at 615.293 kb on + strand, within BPHYT_RS22525 at 615.337 kb on - strand, within BPHYT_RS22525 at 615.348 kb on - strand, within BPHYT_RS22525 at 615.384 kb on + strand, within BPHYT_RS22525 at 615.432 kb on + strand, within BPHYT_RS22525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 612,209 + BPHYT_RS22515 0.73 +0.1 612,360 - BPHYT_RS22515 0.78 +0.6 612,368 + BPHYT_RS22515 0.78 +0.7 612,371 - BPHYT_RS22515 0.78 -0.6 612,498 - BPHYT_RS22515 0.82 -0.1 612,582 - BPHYT_RS22515 0.85 -0.5 612,980 + -0.3 612,981 - -1.3 613,043 + -0.4 613,720 - BPHYT_RS22520 0.40 +1.9 613,759 - BPHYT_RS22520 0.42 -1.5 613,759 - BPHYT_RS22520 0.42 +0.0 614,445 + BPHYT_RS22520 0.85 -0.8 614,467 - BPHYT_RS22520 0.86 +1.8 614,467 - BPHYT_RS22520 0.86 -0.7 614,790 + -0.7 614,814 - -0.3 615,293 + BPHYT_RS22525 0.28 -0.7 615,337 - BPHYT_RS22525 0.33 +1.6 615,348 - BPHYT_RS22525 0.34 -2.6 615,384 + BPHYT_RS22525 0.39 -0.2 615,432 + BPHYT_RS22525 0.44 -0.7
Or see this region's nucleotide sequence