Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20455 and BPHYT_RS20460 are separated by 227 nucleotides BPHYT_RS20460 and BPHYT_RS20465 are separated by 116 nucleotides
BPHYT_RS20455: BPHYT_RS20455 - hypothetical protein, at 151,656 to 152,333
_RS20455
BPHYT_RS20460: BPHYT_RS20460 - NmrA family transcriptional regulator, at 152,561 to 153,442
_RS20460
BPHYT_RS20465: BPHYT_RS20465 - LysR family transcriptional regulator, at 153,559 to 154,443
_RS20465
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1 at 151.664 kb on + strand at 151.878 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.018 kb on - strand, within BPHYT_RS20455 at 152.058 kb on - strand, within BPHYT_RS20455 at 152.142 kb on - strand, within BPHYT_RS20455 at 152.153 kb on + strand, within BPHYT_RS20455 at 152.167 kb on + strand, within BPHYT_RS20455 at 152.423 kb on + strand at 152.475 kb on + strand at 152.517 kb on - strand at 152.554 kb on + strand at 152.757 kb on - strand, within BPHYT_RS20460 at 152.757 kb on - strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.859 kb on + strand, within BPHYT_RS20460 at 152.860 kb on - strand, within BPHYT_RS20460 at 152.975 kb on - strand, within BPHYT_RS20460 at 152.980 kb on - strand, within BPHYT_RS20460 at 153.033 kb on + strand, within BPHYT_RS20460 at 153.034 kb on - strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.150 kb on + strand, within BPHYT_RS20460 at 153.418 kb on + strand at 153.428 kb on + strand at 153.482 kb on + strand at 153.970 kb on + strand, within BPHYT_RS20465 at 154.073 kb on + strand, within BPHYT_RS20465 at 154.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 151,664 + -0.8 151,878 - BPHYT_RS20455 0.33 +0.3 152,018 - BPHYT_RS20455 0.53 +0.1 152,018 - BPHYT_RS20455 0.53 +0.5 152,058 - BPHYT_RS20455 0.59 +0.5 152,142 - BPHYT_RS20455 0.72 +1.1 152,153 + BPHYT_RS20455 0.73 +0.4 152,167 + BPHYT_RS20455 0.75 +0.3 152,423 + -2.7 152,475 + +0.0 152,517 - +0.4 152,554 + -1.0 152,757 - BPHYT_RS20460 0.22 +0.7 152,757 - BPHYT_RS20460 0.22 -0.2 152,859 + BPHYT_RS20460 0.34 -0.7 152,859 + BPHYT_RS20460 0.34 -0.1 152,859 + BPHYT_RS20460 0.34 +1.0 152,860 - BPHYT_RS20460 0.34 +0.0 152,975 - BPHYT_RS20460 0.47 -0.3 152,980 - BPHYT_RS20460 0.48 -0.2 153,033 + BPHYT_RS20460 0.54 +0.0 153,034 - BPHYT_RS20460 0.54 +0.1 153,150 + BPHYT_RS20460 0.67 -0.8 153,150 + BPHYT_RS20460 0.67 +0.4 153,418 + -0.6 153,428 + -0.0 153,482 + -0.3 153,970 + BPHYT_RS20465 0.46 +0.1 154,073 + BPHYT_RS20465 0.58 +1.4 154,361 - -0.2
Or see this region's nucleotide sequence