Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20400 and BPHYT_RS20405 are separated by 423 nucleotides BPHYT_RS20405 and BPHYT_RS20410 are separated by 132 nucleotides
BPHYT_RS20400: BPHYT_RS20400 - GntR family transcriptional regulator, at 139,047 to 139,757
_RS20400
BPHYT_RS20405: BPHYT_RS20405 - MFS transporter, at 140,181 to 141,512
_RS20405
BPHYT_RS20410: BPHYT_RS20410 - glucarate dehydratase, at 141,645 to 142,994
_RS20410
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1
2 at 139.832 kb on - strand at 139.832 kb on - strand at 139.834 kb on - strand at 139.842 kb on + strand at 139.843 kb on - strand at 140.006 kb on - strand at 140.283 kb on + strand at 140.283 kb on + strand at 140.283 kb on + strand at 140.356 kb on - strand, within BPHYT_RS20405 at 140.430 kb on + strand, within BPHYT_RS20405 at 140.431 kb on - strand, within BPHYT_RS20405 at 140.431 kb on - strand, within BPHYT_RS20405 at 140.520 kb on + strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.521 kb on - strand, within BPHYT_RS20405 at 140.758 kb on + strand, within BPHYT_RS20405 at 140.795 kb on + strand, within BPHYT_RS20405 at 140.796 kb on - strand, within BPHYT_RS20405 at 140.949 kb on + strand, within BPHYT_RS20405 at 140.949 kb on + strand, within BPHYT_RS20405 at 140.973 kb on + strand, within BPHYT_RS20405 at 141.084 kb on + strand, within BPHYT_RS20405 at 141.084 kb on + strand, within BPHYT_RS20405 at 141.085 kb on - strand, within BPHYT_RS20405 at 141.085 kb on - strand, within BPHYT_RS20405 at 141.514 kb on + strand at 141.514 kb on + strand at 141.624 kb on + strand at 141.625 kb on - strand at 141.735 kb on - strand at 141.849 kb on - strand, within BPHYT_RS20410 at 142.104 kb on + strand, within BPHYT_RS20410 at 142.104 kb on + strand, within BPHYT_RS20410 at 142.105 kb on - strand, within BPHYT_RS20410 at 142.114 kb on - strand, within BPHYT_RS20410 at 142.146 kb on + strand, within BPHYT_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 139,832 - +0.3 139,832 - -0.8 139,834 - -0.2 139,842 + -0.4 139,843 - +0.0 140,006 - +1.0 140,283 + -0.9 140,283 + +0.9 140,283 + +0.2 140,356 - BPHYT_RS20405 0.13 -1.8 140,430 + BPHYT_RS20405 0.19 +2.1 140,431 - BPHYT_RS20405 0.19 +0.0 140,431 - BPHYT_RS20405 0.19 +0.3 140,520 + BPHYT_RS20405 0.25 -0.3 140,521 - BPHYT_RS20405 0.26 -0.5 140,521 - BPHYT_RS20405 0.26 +1.5 140,521 - BPHYT_RS20405 0.26 +2.3 140,521 - BPHYT_RS20405 0.26 +2.2 140,758 + BPHYT_RS20405 0.43 +0.8 140,795 + BPHYT_RS20405 0.46 -0.8 140,796 - BPHYT_RS20405 0.46 +0.1 140,949 + BPHYT_RS20405 0.58 -1.4 140,949 + BPHYT_RS20405 0.58 +0.3 140,973 + BPHYT_RS20405 0.59 -1.3 141,084 + BPHYT_RS20405 0.68 -1.5 141,084 + BPHYT_RS20405 0.68 -0.5 141,085 - BPHYT_RS20405 0.68 -0.6 141,085 - BPHYT_RS20405 0.68 +0.0 141,514 + -0.6 141,514 + -1.3 141,624 + +1.3 141,625 - -0.1 141,735 - -0.3 141,849 - BPHYT_RS20410 0.15 +0.3 142,104 + BPHYT_RS20410 0.34 +2.1 142,104 + BPHYT_RS20410 0.34 +0.5 142,105 - BPHYT_RS20410 0.34 -0.4 142,114 - BPHYT_RS20410 0.35 +0.4 142,146 + BPHYT_RS20410 0.37 +0.7
Or see this region's nucleotide sequence