Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18610 and BPHYT_RS18615 are separated by 77 nucleotides BPHYT_RS18615 and BPHYT_RS18620 are separated by 43 nucleotides BPHYT_RS18620 and BPHYT_RS18625 are separated by 205 nucleotides BPHYT_RS18625 and BPHYT_RS18630 overlap by 4 nucleotides
BPHYT_RS18610: BPHYT_RS18610 - lytic transglycosylase, at 4,185,733 to 4,187,700
_RS18610
BPHYT_RS18615: BPHYT_RS18615 - 5-formyltetrahydrofolate cyclo-ligase, at 4,187,778 to 4,188,320
_RS18615
BPHYT_RS18620: BPHYT_RS18620 - transcriptional regulator, at 4,188,364 to 4,188,876
_RS18620
BPHYT_RS18625: BPHYT_RS18625 - allophanate hydrolase, at 4,189,082 to 4,189,735
_RS18625
BPHYT_RS18630: BPHYT_RS18630 - allophanate hydrolase, at 4,189,732 to 4,190,784
_RS18630
Position (kb) 4188
4189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4187.468 kb on + strand, within BPHYT_RS18610 at 4187.734 kb on + strand at 4187.735 kb on - strand at 4187.735 kb on - strand at 4187.735 kb on - strand at 4187.783 kb on - strand at 4187.889 kb on + strand, within BPHYT_RS18615 at 4188.156 kb on + strand, within BPHYT_RS18615 at 4188.159 kb on + strand, within BPHYT_RS18615 at 4188.220 kb on - strand, within BPHYT_RS18615 at 4188.220 kb on - strand, within BPHYT_RS18615 at 4188.248 kb on - strand, within BPHYT_RS18615 at 4188.330 kb on - strand at 4188.365 kb on + strand at 4188.367 kb on + strand at 4188.368 kb on - strand at 4188.578 kb on - strand, within BPHYT_RS18620 at 4188.578 kb on - strand, within BPHYT_RS18620 at 4188.582 kb on - strand, within BPHYT_RS18620 at 4188.588 kb on + strand, within BPHYT_RS18620 at 4188.592 kb on + strand, within BPHYT_RS18620 at 4188.612 kb on - strand, within BPHYT_RS18620 at 4188.723 kb on + strand, within BPHYT_RS18620 at 4188.724 kb on - strand, within BPHYT_RS18620 at 4188.921 kb on - strand at 4188.990 kb on - strand at 4188.995 kb on - strand at 4189.076 kb on + strand at 4189.093 kb on + strand at 4189.093 kb on + strand at 4189.094 kb on - strand at 4189.094 kb on - strand at 4189.122 kb on + strand at 4189.123 kb on - strand at 4189.454 kb on + strand, within BPHYT_RS18625 at 4189.455 kb on - strand, within BPHYT_RS18625 at 4189.455 kb on - strand, within BPHYT_RS18625 at 4189.493 kb on + strand, within BPHYT_RS18625 at 4189.493 kb on + strand, within BPHYT_RS18625 at 4189.494 kb on - strand, within BPHYT_RS18625 at 4189.523 kb on - strand, within BPHYT_RS18625 at 4189.523 kb on - strand, within BPHYT_RS18625 at 4189.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,187,468 + BPHYT_RS18610 0.88 -0.9 4,187,734 + -1.0 4,187,735 - +1.5 4,187,735 - -0.5 4,187,735 - -0.3 4,187,783 - -0.5 4,187,889 + BPHYT_RS18615 0.20 -2.3 4,188,156 + BPHYT_RS18615 0.70 -1.4 4,188,159 + BPHYT_RS18615 0.70 -1.2 4,188,220 - BPHYT_RS18615 0.81 -0.0 4,188,220 - BPHYT_RS18615 0.81 -0.4 4,188,248 - BPHYT_RS18615 0.87 -1.1 4,188,330 - +0.1 4,188,365 + -0.4 4,188,367 + -0.6 4,188,368 - -1.1 4,188,578 - BPHYT_RS18620 0.42 -2.1 4,188,578 - BPHYT_RS18620 0.42 +0.7 4,188,582 - BPHYT_RS18620 0.42 -0.6 4,188,588 + BPHYT_RS18620 0.44 -1.3 4,188,592 + BPHYT_RS18620 0.44 -0.3 4,188,612 - BPHYT_RS18620 0.48 -0.5 4,188,723 + BPHYT_RS18620 0.70 -0.3 4,188,724 - BPHYT_RS18620 0.70 -0.8 4,188,921 - -0.4 4,188,990 - -0.4 4,188,995 - +0.2 4,189,076 + +0.7 4,189,093 + +1.4 4,189,093 + +0.2 4,189,094 - -0.7 4,189,094 - -0.6 4,189,122 + +0.4 4,189,123 - -2.2 4,189,454 + BPHYT_RS18625 0.57 +0.4 4,189,455 - BPHYT_RS18625 0.57 -0.9 4,189,455 - BPHYT_RS18625 0.57 -1.4 4,189,493 + BPHYT_RS18625 0.63 -0.3 4,189,493 + BPHYT_RS18625 0.63 +0.5 4,189,494 - BPHYT_RS18625 0.63 +2.2 4,189,523 - BPHYT_RS18625 0.67 -0.3 4,189,523 - BPHYT_RS18625 0.67 +0.3 4,189,726 - +1.3
Or see this region's nucleotide sequence