Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS11925 and BPHYT_RS11930 are separated by 10 nucleotides BPHYT_RS11930 and BPHYT_RS11935 are separated by 18 nucleotides BPHYT_RS11935 and BPHYT_RS11940 are separated by 241 nucleotides
BPHYT_RS11925: BPHYT_RS11925 - membrane protein, at 2,712,602 to 2,713,873
_RS11925
BPHYT_RS11930: BPHYT_RS11930 - 3-hydroxybutyrate dehydrogenase, at 2,713,884 to 2,714,666
_RS11930
BPHYT_RS11935: BPHYT_RS11935 - acetoacetate decarboxylase, at 2,714,685 to 2,715,464
_RS11935
BPHYT_RS11940: BPHYT_RS11940 - hypothetical protein, at 2,715,706 to 2,716,509
_RS11940
Position (kb) 2714
2715
2716 Strain fitness (log2 ratio) -1
0
1
2 at 2713.754 kb on + strand at 2714.050 kb on - strand, within BPHYT_RS11930 at 2714.050 kb on - strand at 2714.252 kb on - strand, within BPHYT_RS11930 at 2714.728 kb on + strand at 2716.066 kb on + strand, within BPHYT_RS11940
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 2,713,754 + +0.6 2,714,050 - BPHYT_RS11930 0.21 -0.9 2,714,050 - +1.1 2,714,252 - BPHYT_RS11930 0.47 -1.1 2,714,728 + +1.9 2,716,066 + BPHYT_RS11940 0.45 +0.5
Or see this region's nucleotide sequence