Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04110 and BPHYT_RS04115 are separated by 794 nucleotides BPHYT_RS04115 and BPHYT_RS04120 are separated by 336 nucleotides
BPHYT_RS04110: BPHYT_RS04110 - beta-glucosidase, at 936,438 to 938,126
_RS04110
BPHYT_RS04115: BPHYT_RS04115 - glycosyhydrolase, at 938,921 to 940,375
_RS04115
BPHYT_RS04120: BPHYT_RS04120 - protein tyrosine kinase, at 940,712 to 943,066
_RS04120
Position (kb) 938
939
940
941 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 938.251 kb on + strand at 938.313 kb on + strand at 938.325 kb on - strand at 938.398 kb on + strand at 938.416 kb on + strand at 938.416 kb on + strand at 938.573 kb on - strand at 938.745 kb on - strand at 938.763 kb on - strand at 938.823 kb on - strand at 938.929 kb on - strand at 939.233 kb on + strand, within BPHYT_RS04115 at 939.757 kb on + strand, within BPHYT_RS04115 at 939.757 kb on + strand, within BPHYT_RS04115 at 939.833 kb on + strand, within BPHYT_RS04115 at 940.035 kb on - strand, within BPHYT_RS04115 at 940.254 kb on + strand at 940.271 kb on + strand at 940.272 kb on - strand at 940.404 kb on + strand at 940.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 938,251 + +2.3 938,313 + +0.2 938,325 - -0.7 938,398 + -2.4 938,416 + -0.5 938,416 + +0.0 938,573 - -1.2 938,745 - -0.5 938,763 - -0.3 938,823 - +3.8 938,929 - -0.5 939,233 + BPHYT_RS04115 0.21 +0.3 939,757 + BPHYT_RS04115 0.57 +0.2 939,757 + BPHYT_RS04115 0.57 +2.5 939,833 + BPHYT_RS04115 0.63 +0.7 940,035 - BPHYT_RS04115 0.77 -0.0 940,254 + +0.7 940,271 + -1.1 940,272 - +0.2 940,404 + -0.8 940,919 - -0.9
Or see this region's nucleotide sequence