Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotides BPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotides BPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837
_RS02460
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414
_RS02470
Position (kb) 558
559 Strain fitness (log2 ratio) -1
0
1
2
3 at 557.147 kb on + strand, within BPHYT_RS02455 at 557.273 kb on - strand, within BPHYT_RS02455 at 557.343 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.575 kb on + strand, within BPHYT_RS02455 at 557.576 kb on - strand, within BPHYT_RS02455 at 557.813 kb on + strand, within BPHYT_RS02455 at 558.129 kb on - strand, within BPHYT_RS02460 at 558.133 kb on - strand, within BPHYT_RS02460 at 558.242 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.515 kb on + strand, within BPHYT_RS02460 at 558.696 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 559.028 kb on - strand, within BPHYT_RS02465 at 559.243 kb on - strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.407 kb on + strand, within BPHYT_RS02465 at 559.408 kb on - strand, within BPHYT_RS02465 at 559.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 557,147 + BPHYT_RS02455 0.13 +0.1 557,273 - BPHYT_RS02455 0.26 +0.1 557,343 + BPHYT_RS02455 0.33 -0.7 557,522 + BPHYT_RS02455 0.52 -0.4 557,522 + BPHYT_RS02455 0.52 -0.6 557,522 + BPHYT_RS02455 0.52 +1.0 557,522 + BPHYT_RS02455 0.52 +1.2 557,524 + BPHYT_RS02455 0.52 -0.0 557,524 + BPHYT_RS02455 0.52 -0.2 557,575 + BPHYT_RS02455 0.57 -0.2 557,576 - BPHYT_RS02455 0.57 -1.0 557,813 + BPHYT_RS02455 0.81 +1.1 558,129 - BPHYT_RS02460 0.11 +0.7 558,133 - BPHYT_RS02460 0.12 -0.9 558,242 + BPHYT_RS02460 0.25 -0.6 558,442 + BPHYT_RS02460 0.50 -0.9 558,442 + BPHYT_RS02460 0.50 +1.5 558,442 + BPHYT_RS02460 0.50 +0.4 558,515 + BPHYT_RS02460 0.60 -0.4 558,696 + BPHYT_RS02460 0.82 -1.2 558,700 + BPHYT_RS02460 0.83 +1.3 558,700 + BPHYT_RS02460 0.83 +0.3 558,700 + BPHYT_RS02460 0.83 +0.6 558,701 - BPHYT_RS02460 0.83 +1.1 558,701 - BPHYT_RS02460 0.83 -0.1 558,701 - BPHYT_RS02460 0.83 +0.0 559,028 - BPHYT_RS02465 0.22 +1.7 559,243 - BPHYT_RS02465 0.47 +0.1 559,326 + BPHYT_RS02465 0.57 -0.1 559,326 + BPHYT_RS02465 0.57 -0.3 559,326 + BPHYT_RS02465 0.57 -0.6 559,327 - BPHYT_RS02465 0.57 +2.4 559,327 - BPHYT_RS02465 0.57 +0.5 559,407 + BPHYT_RS02465 0.66 +0.3 559,408 - BPHYT_RS02465 0.66 +2.8 559,702 - -0.6
Or see this region's nucleotide sequence