Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02445 and BPHYT_RS02450 are separated by 311 nucleotides BPHYT_RS02450 and BPHYT_RS02455 are separated by 314 nucleotides
BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942
_RS02445
BPHYT_RS02450: BPHYT_RS02450 - hypothetical protein, at 556,254 to 556,700
_RS02450
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
Position (kb) 556
557 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 555.949 kb on + strand at 555.956 kb on + strand at 555.957 kb on - strand at 556.070 kb on + strand at 556.073 kb on + strand at 556.677 kb on - strand at 556.677 kb on - strand at 556.701 kb on - strand at 556.901 kb on + strand at 556.931 kb on - strand at 556.931 kb on - strand at 557.147 kb on + strand, within BPHYT_RS02455 at 557.273 kb on - strand, within BPHYT_RS02455 at 557.343 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.522 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.524 kb on + strand, within BPHYT_RS02455 at 557.575 kb on + strand, within BPHYT_RS02455 at 557.576 kb on - strand, within BPHYT_RS02455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 555,949 + -1.2 555,956 + +0.0 555,957 - -0.0 556,070 + -0.2 556,073 + +4.1 556,677 - -2.0 556,677 - -0.7 556,701 - +0.3 556,901 + +0.8 556,931 - -0.5 556,931 - +0.4 557,147 + BPHYT_RS02455 0.13 +0.1 557,273 - BPHYT_RS02455 0.26 +0.1 557,343 + BPHYT_RS02455 0.33 -0.7 557,522 + BPHYT_RS02455 0.52 -0.4 557,522 + BPHYT_RS02455 0.52 -0.6 557,522 + BPHYT_RS02455 0.52 +1.0 557,522 + BPHYT_RS02455 0.52 +1.2 557,524 + BPHYT_RS02455 0.52 -0.0 557,524 + BPHYT_RS02455 0.52 -0.2 557,575 + BPHYT_RS02455 0.57 -0.2 557,576 - BPHYT_RS02455 0.57 -1.0
Or see this region's nucleotide sequence