Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02330 and BPHYT_RS02335 are separated by 128 nucleotides BPHYT_RS02335 and BPHYT_RS02340 are separated by 253 nucleotides
BPHYT_RS02330: BPHYT_RS02330 - IclR family transcriptional regulator, at 534,240 to 535,142
_RS02330
BPHYT_RS02335: BPHYT_RS02335 - fumarylacetoacetate hydrolase, at 535,271 to 536,254
_RS02335
BPHYT_RS02340: BPHYT_RS02340 - branched-chain amino acid ABC transporter substrate-binding protein, at 536,508 to 537,743
_RS02340
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 534.277 kb on + strand at 534.277 kb on + strand at 534.278 kb on - strand at 534.335 kb on + strand, within BPHYT_RS02330 at 534.586 kb on + strand, within BPHYT_RS02330 at 534.587 kb on - strand, within BPHYT_RS02330 at 534.895 kb on + strand, within BPHYT_RS02330 at 534.896 kb on - strand, within BPHYT_RS02330 at 535.178 kb on + strand at 535.178 kb on + strand at 535.179 kb on - strand at 535.179 kb on - strand at 535.179 kb on - strand at 535.227 kb on + strand at 535.227 kb on + strand at 535.228 kb on - strand at 535.233 kb on - strand at 535.233 kb on - strand at 535.252 kb on + strand at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.532 kb on + strand, within BPHYT_RS02335 at 535.554 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.653 kb on + strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 535.654 kb on - strand, within BPHYT_RS02335 at 536.094 kb on - strand, within BPHYT_RS02335 at 536.173 kb on + strand at 536.174 kb on - strand at 536.297 kb on + strand at 536.361 kb on - strand at 536.475 kb on - strand at 536.635 kb on + strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.636 kb on - strand, within BPHYT_RS02340 at 536.677 kb on + strand, within BPHYT_RS02340 at 536.678 kb on - strand, within BPHYT_RS02340 at 536.773 kb on - strand, within BPHYT_RS02340 at 536.801 kb on + strand, within BPHYT_RS02340 at 536.802 kb on - strand, within BPHYT_RS02340 at 536.903 kb on - strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.105 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340 at 537.203 kb on + strand, within BPHYT_RS02340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 534,277 + -1.3 534,277 + -0.2 534,278 - +1.3 534,335 + BPHYT_RS02330 0.11 -0.5 534,586 + BPHYT_RS02330 0.38 -0.8 534,587 - BPHYT_RS02330 0.38 -0.4 534,895 + BPHYT_RS02330 0.73 +0.9 534,896 - BPHYT_RS02330 0.73 +0.4 535,178 + -0.1 535,178 + -0.0 535,179 - -0.9 535,179 - +3.4 535,179 - -0.8 535,227 + -0.0 535,227 + -0.7 535,228 - -0.8 535,233 - +1.3 535,233 - -2.2 535,252 + -2.0 535,532 + BPHYT_RS02335 0.27 +0.6 535,532 + BPHYT_RS02335 0.27 -0.1 535,532 + BPHYT_RS02335 0.27 +0.7 535,554 + BPHYT_RS02335 0.29 -0.1 535,653 + BPHYT_RS02335 0.39 +0.0 535,653 + BPHYT_RS02335 0.39 +0.3 535,653 + BPHYT_RS02335 0.39 -0.8 535,653 + BPHYT_RS02335 0.39 -0.7 535,654 - BPHYT_RS02335 0.39 +0.8 535,654 - BPHYT_RS02335 0.39 +0.3 535,654 - BPHYT_RS02335 0.39 +0.5 536,094 - BPHYT_RS02335 0.84 +0.6 536,173 + -0.6 536,174 - +0.5 536,297 + -0.2 536,361 - -0.1 536,475 - -1.5 536,635 + BPHYT_RS02340 0.10 -0.2 536,636 - BPHYT_RS02340 0.10 +1.3 536,636 - BPHYT_RS02340 0.10 +0.7 536,677 + BPHYT_RS02340 0.14 -0.0 536,678 - BPHYT_RS02340 0.14 -0.6 536,773 - BPHYT_RS02340 0.21 -1.2 536,801 + BPHYT_RS02340 0.24 -0.4 536,802 - BPHYT_RS02340 0.24 +0.2 536,903 - BPHYT_RS02340 0.32 +0.6 537,105 + BPHYT_RS02340 0.48 +0.9 537,105 + BPHYT_RS02340 0.48 +2.0 537,203 + BPHYT_RS02340 0.56 +1.0 537,203 + BPHYT_RS02340 0.56 -1.0
Or see this region's nucleotide sequence