Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01020 and BPHYT_RS01025 are separated by 353 nucleotides BPHYT_RS01025 and BPHYT_RS01030 are separated by 366 nucleotides
BPHYT_RS01020: BPHYT_RS01020 - hypothetical protein, at 233,607 to 235,835
_RS01020
BPHYT_RS01025: BPHYT_RS01025 - hypothetical protein, at 236,189 to 236,752
_RS01025
BPHYT_RS01030: BPHYT_RS01030 - bacterioferritin, at 237,119 to 237,598
_RS01030
Position (kb) 236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.226 kb on + strand, within BPHYT_RS01020 at 235.226 kb on + strand, within BPHYT_RS01020 at 235.327 kb on - strand, within BPHYT_RS01020 at 235.342 kb on + strand, within BPHYT_RS01020 at 235.700 kb on + strand at 235.700 kb on + strand at 235.701 kb on - strand at 235.701 kb on - strand at 235.730 kb on + strand at 235.925 kb on + strand at 235.931 kb on - strand at 235.956 kb on - strand at 236.062 kb on + strand at 236.062 kb on + strand at 236.063 kb on - strand at 236.155 kb on + strand at 236.155 kb on + strand at 236.160 kb on - strand at 236.213 kb on - strand at 237.025 kb on + strand at 237.025 kb on + strand at 237.025 kb on + strand at 237.026 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.120 kb on + strand at 237.153 kb on + strand at 237.279 kb on + strand, within BPHYT_RS01030 at 237.466 kb on - strand, within BPHYT_RS01030 at 237.504 kb on + strand, within BPHYT_RS01030 at 237.504 kb on + strand, within BPHYT_RS01030 at 237.505 kb on - strand, within BPHYT_RS01030 at 237.525 kb on + strand, within BPHYT_RS01030 at 237.525 kb on + strand, within BPHYT_RS01030 at 237.627 kb on - strand at 237.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 235,226 + BPHYT_RS01020 0.73 +0.2 235,226 + BPHYT_RS01020 0.73 +1.3 235,327 - BPHYT_RS01020 0.77 +0.1 235,342 + BPHYT_RS01020 0.78 -1.5 235,700 + +0.8 235,700 + +0.1 235,701 - -0.3 235,701 - +1.8 235,730 + -0.3 235,925 + -0.1 235,931 - +0.1 235,956 - +0.2 236,062 + +0.7 236,062 + +0.9 236,063 - -0.2 236,155 + +2.2 236,155 + +1.2 236,160 - -0.8 236,213 - -0.0 237,025 + +0.1 237,025 + +1.2 237,025 + -1.9 237,026 - -3.6 237,030 - +0.3 237,030 - -1.4 237,030 - -1.9 237,030 - +0.2 237,030 - -0.0 237,030 - +0.2 237,120 + +0.2 237,153 + -1.0 237,279 + BPHYT_RS01030 0.33 -0.3 237,466 - BPHYT_RS01030 0.72 -0.2 237,504 + BPHYT_RS01030 0.80 -1.4 237,504 + BPHYT_RS01030 0.80 -0.9 237,505 - BPHYT_RS01030 0.80 +1.5 237,525 + BPHYT_RS01030 0.85 +1.4 237,525 + BPHYT_RS01030 0.85 -0.5 237,627 - -0.6 237,702 + +0.2
Or see this region's nucleotide sequence