Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00375 and BPHYT_RS00380 are separated by 134 nucleotides BPHYT_RS00380 and BPHYT_RS00385 overlap by 4 nucleotides
BPHYT_RS00375: BPHYT_RS00375 - sugar ABC transporter, at 94,579 to 95,499
_RS00375
BPHYT_RS00380: BPHYT_RS00380 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 95,634 to 96,227
_RS00380
BPHYT_RS00385: BPHYT_RS00385 - decarboxylase, at 96,224 to 97,567
_RS00385
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 94.681 kb on - strand, within BPHYT_RS00375 at 94.874 kb on + strand, within BPHYT_RS00375 at 95.133 kb on + strand, within BPHYT_RS00375 at 95.221 kb on - strand, within BPHYT_RS00375 at 95.397 kb on + strand, within BPHYT_RS00375 at 95.398 kb on - strand, within BPHYT_RS00375 at 95.405 kb on + strand, within BPHYT_RS00375 at 95.406 kb on - strand, within BPHYT_RS00375 at 95.504 kb on - strand at 95.704 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 96.164 kb on - strand, within BPHYT_RS00380 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.419 kb on - strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385 at 96.510 kb on + strand, within BPHYT_RS00385 at 96.565 kb on - strand, within BPHYT_RS00385 at 96.589 kb on + strand, within BPHYT_RS00385 at 96.590 kb on - strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.624 kb on - strand, within BPHYT_RS00385 at 96.654 kb on + strand, within BPHYT_RS00385 at 96.654 kb on + strand, within BPHYT_RS00385 at 96.655 kb on - strand, within BPHYT_RS00385 at 96.658 kb on + strand, within BPHYT_RS00385 at 96.789 kb on + strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.832 kb on + strand, within BPHYT_RS00385 at 96.993 kb on - strand, within BPHYT_RS00385 at 97.218 kb on + strand, within BPHYT_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 94,681 - BPHYT_RS00375 0.11 +1.2 94,874 + BPHYT_RS00375 0.32 -0.4 95,133 + BPHYT_RS00375 0.60 -1.0 95,221 - BPHYT_RS00375 0.70 -1.8 95,397 + BPHYT_RS00375 0.89 +1.4 95,398 - BPHYT_RS00375 0.89 -0.2 95,405 + BPHYT_RS00375 0.90 +0.9 95,406 - BPHYT_RS00375 0.90 -2.1 95,504 - -0.5 95,704 - BPHYT_RS00380 0.12 -0.1 95,965 - BPHYT_RS00380 0.56 -1.5 95,965 - BPHYT_RS00380 0.56 -0.4 96,164 - BPHYT_RS00380 0.89 +1.2 96,382 - BPHYT_RS00385 0.12 -0.9 96,382 - BPHYT_RS00385 0.12 +2.4 96,419 - BPHYT_RS00385 0.15 -0.5 96,468 + BPHYT_RS00385 0.18 -0.2 96,468 + BPHYT_RS00385 0.18 -0.4 96,468 + BPHYT_RS00385 0.18 +0.5 96,469 - BPHYT_RS00385 0.18 +0.2 96,469 - BPHYT_RS00385 0.18 +0.0 96,510 + BPHYT_RS00385 0.21 -0.9 96,565 - BPHYT_RS00385 0.25 -0.6 96,589 + BPHYT_RS00385 0.27 -0.1 96,590 - BPHYT_RS00385 0.27 +0.9 96,623 + BPHYT_RS00385 0.30 +0.1 96,623 + BPHYT_RS00385 0.30 +0.7 96,623 + BPHYT_RS00385 0.30 +1.0 96,623 + BPHYT_RS00385 0.30 +0.2 96,624 - BPHYT_RS00385 0.30 -0.4 96,654 + BPHYT_RS00385 0.32 -0.5 96,654 + BPHYT_RS00385 0.32 +0.2 96,655 - BPHYT_RS00385 0.32 +0.4 96,658 + BPHYT_RS00385 0.32 -0.8 96,789 + BPHYT_RS00385 0.42 -0.7 96,790 - BPHYT_RS00385 0.42 +1.7 96,790 - BPHYT_RS00385 0.42 +6.7 96,790 - BPHYT_RS00385 0.42 +0.2 96,832 + BPHYT_RS00385 0.45 +0.4 96,993 - BPHYT_RS00385 0.57 -0.0 97,218 + BPHYT_RS00385 0.74 +0.5
Or see this region's nucleotide sequence