Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00310 and BPHYT_RS00315 are separated by 774 nucleotides BPHYT_RS00315 and BPHYT_RS00320 are separated by 145 nucleotides
BPHYT_RS00310: BPHYT_RS00310 - hypothetical protein, at 77,409 to 78,389
_RS00310
BPHYT_RS00315: BPHYT_RS00315 - hypothetical protein, at 79,164 to 79,841
_RS00315
BPHYT_RS00320: BPHYT_RS00320 - amino acid ABC transporter substrate-binding protein, at 79,987 to 81,129
_RS00320
Position (kb) 79
80 Strain fitness (log2 ratio) -1
0
1
2
3 at 78.207 kb on + strand, within BPHYT_RS00310 at 78.207 kb on + strand, within BPHYT_RS00310 at 78.208 kb on - strand, within BPHYT_RS00310 at 78.208 kb on - strand, within BPHYT_RS00310 at 78.315 kb on + strand at 78.316 kb on - strand at 78.316 kb on - strand at 78.335 kb on - strand at 78.467 kb on - strand at 78.479 kb on - strand at 78.479 kb on - strand at 78.554 kb on + strand at 78.620 kb on + strand at 78.621 kb on - strand at 78.827 kb on + strand at 78.827 kb on + strand at 79.925 kb on + strand at 79.925 kb on + strand at 79.926 kb on - strand at 79.926 kb on - strand at 79.926 kb on - strand at 79.944 kb on - strand at 79.944 kb on - strand at 80.470 kb on + strand, within BPHYT_RS00320 at 80.471 kb on - strand, within BPHYT_RS00320 at 80.643 kb on + strand, within BPHYT_RS00320 at 80.643 kb on + strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.644 kb on - strand, within BPHYT_RS00320 at 80.670 kb on - strand, within BPHYT_RS00320 at 80.825 kb on - strand, within BPHYT_RS00320
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 78,207 + BPHYT_RS00310 0.81 -1.1 78,207 + BPHYT_RS00310 0.81 -0.0 78,208 - BPHYT_RS00310 0.81 -0.8 78,208 - BPHYT_RS00310 0.81 -0.1 78,315 + +0.3 78,316 - -0.1 78,316 - -1.7 78,335 - +2.2 78,467 - -0.6 78,479 - -1.0 78,479 - +0.9 78,554 + -1.6 78,620 + +0.2 78,621 - +0.4 78,827 + +0.7 78,827 + +2.9 79,925 + +0.4 79,925 + -0.3 79,926 - +1.2 79,926 - -1.4 79,926 - -0.8 79,944 - -0.2 79,944 - -0.6 80,470 + BPHYT_RS00320 0.42 +0.4 80,471 - BPHYT_RS00320 0.42 +0.4 80,643 + BPHYT_RS00320 0.57 +0.7 80,643 + BPHYT_RS00320 0.57 +0.1 80,644 - BPHYT_RS00320 0.57 -1.1 80,644 - BPHYT_RS00320 0.57 -0.1 80,644 - BPHYT_RS00320 0.57 -0.4 80,644 - BPHYT_RS00320 0.57 -0.0 80,670 - BPHYT_RS00320 0.60 -0.9 80,825 - BPHYT_RS00320 0.73 -1.5
Or see this region's nucleotide sequence