Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00200 and BPHYT_RS00205 are separated by 185 nucleotides BPHYT_RS00205 and BPHYT_RS00210 overlap by 23 nucleotides
BPHYT_RS00200: BPHYT_RS00200 - amidase, at 53,149 to 54,552
_RS00200
BPHYT_RS00205: BPHYT_RS00205 - DeoR family transcriptional regulator, at 54,738 to 55,496
_RS00205
BPHYT_RS00210: BPHYT_RS00210 - allantoate amidohydrolase, at 55,474 to 56,766
_RS00210
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 53.792 kb on + strand, within BPHYT_RS00200 at 53.875 kb on + strand, within BPHYT_RS00200 at 53.876 kb on - strand, within BPHYT_RS00200 at 54.094 kb on + strand, within BPHYT_RS00200 at 54.152 kb on + strand, within BPHYT_RS00200 at 54.152 kb on + strand, within BPHYT_RS00200 at 54.248 kb on - strand, within BPHYT_RS00200 at 54.566 kb on - strand at 54.566 kb on - strand at 54.566 kb on - strand at 54.671 kb on + strand at 54.708 kb on - strand at 54.715 kb on + strand at 54.756 kb on - strand at 55.202 kb on + strand, within BPHYT_RS00205 at 55.231 kb on - strand, within BPHYT_RS00205 at 55.450 kb on - strand at 55.460 kb on + strand at 55.483 kb on + strand at 55.483 kb on + strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.484 kb on - strand at 55.494 kb on + strand at 55.634 kb on + strand, within BPHYT_RS00210 at 55.739 kb on - strand, within BPHYT_RS00210 at 55.764 kb on + strand, within BPHYT_RS00210 at 55.765 kb on - strand, within BPHYT_RS00210 at 56.075 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.136 kb on - strand, within BPHYT_RS00210 at 56.267 kb on - strand, within BPHYT_RS00210 at 56.368 kb on + strand, within BPHYT_RS00210 at 56.369 kb on - strand, within BPHYT_RS00210 at 56.489 kb on + strand, within BPHYT_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 53,792 + BPHYT_RS00200 0.46 +0.1 53,875 + BPHYT_RS00200 0.52 +0.7 53,876 - BPHYT_RS00200 0.52 -0.5 54,094 + BPHYT_RS00200 0.67 -0.5 54,152 + BPHYT_RS00200 0.71 +1.0 54,152 + BPHYT_RS00200 0.71 +0.7 54,248 - BPHYT_RS00200 0.78 -0.6 54,566 - +2.8 54,566 - +3.0 54,566 - -1.7 54,671 + +0.3 54,708 - -0.5 54,715 + +0.1 54,756 - +0.5 55,202 + BPHYT_RS00205 0.61 -0.5 55,231 - BPHYT_RS00205 0.65 -1.8 55,450 - -3.1 55,460 + -1.4 55,483 + +0.2 55,483 + -0.3 55,484 - +1.0 55,484 - -0.8 55,484 - -1.4 55,494 + -2.1 55,634 + BPHYT_RS00210 0.12 -0.1 55,739 - BPHYT_RS00210 0.20 -0.6 55,764 + BPHYT_RS00210 0.22 +1.8 55,765 - BPHYT_RS00210 0.23 +0.6 56,075 - BPHYT_RS00210 0.46 -0.5 56,136 - BPHYT_RS00210 0.51 +1.7 56,136 - BPHYT_RS00210 0.51 -0.1 56,267 - BPHYT_RS00210 0.61 +0.4 56,368 + BPHYT_RS00210 0.69 -0.3 56,369 - BPHYT_RS00210 0.69 +1.4 56,489 + BPHYT_RS00210 0.78 +0.0
Or see this region's nucleotide sequence