Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36225 and BPHYT_RS36230 are separated by 55 nucleotides BPHYT_RS36230 and BPHYT_RS36235 are separated by 691 nucleotides BPHYT_RS36235 and BPHYT_RS36240 are separated by 48 nucleotides BPHYT_RS36240 and BPHYT_RS36245 are separated by 18 nucleotides BPHYT_RS36245 and BPHYT_RS36250 are separated by 159 nucleotides
BPHYT_RS36225: BPHYT_RS36225 - hypothetical protein, at 59,266 to 59,538
_RS36225
BPHYT_RS36230: BPHYT_RS36230 - hypothetical protein, at 59,594 to 59,788
_RS36230
BPHYT_RS36235: BPHYT_RS36235 - hypothetical protein, at 60,480 to 60,860
_RS36235
BPHYT_RS36240: BPHYT_RS36240 - hypothetical protein, at 60,909 to 61,121
_RS36240
BPHYT_RS36245: BPHYT_RS36245 - hypothetical protein, at 61,140 to 61,418
_RS36245
BPHYT_RS36250: BPHYT_RS36250 - hypothetical protein, at 61,578 to 61,940
_RS36250
Position (kb) 60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 59.678 kb on + strand, within BPHYT_RS36230 at 59.678 kb on + strand, within BPHYT_RS36230 at 59.850 kb on - strand at 60.479 kb on + strand at 60.570 kb on - strand, within BPHYT_RS36235 at 60.908 kb on + strand at 60.948 kb on - strand, within BPHYT_RS36240 at 60.994 kb on + strand, within BPHYT_RS36240 at 60.995 kb on - strand, within BPHYT_RS36240 at 61.203 kb on + strand, within BPHYT_RS36245 at 61.224 kb on + strand, within BPHYT_RS36245 at 61.225 kb on - strand, within BPHYT_RS36245 at 61.375 kb on + strand, within BPHYT_RS36245 at 61.376 kb on - strand, within BPHYT_RS36245 at 61.488 kb on + strand at 61.543 kb on - strand at 61.543 kb on - strand at 61.701 kb on + strand, within BPHYT_RS36250 at 61.781 kb on - strand, within BPHYT_RS36250
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 59,678 + BPHYT_RS36230 0.43 +0.9 59,678 + BPHYT_RS36230 0.43 -1.7 59,850 - +0.1 60,479 + -0.6 60,570 - BPHYT_RS36235 0.24 +0.3 60,908 + +0.3 60,948 - BPHYT_RS36240 0.18 +0.1 60,994 + BPHYT_RS36240 0.40 +0.7 60,995 - BPHYT_RS36240 0.40 -2.0 61,203 + BPHYT_RS36245 0.23 +0.2 61,224 + BPHYT_RS36245 0.30 +1.2 61,225 - BPHYT_RS36245 0.30 +0.2 61,375 + BPHYT_RS36245 0.84 -1.0 61,376 - BPHYT_RS36245 0.85 +0.7 61,488 + +0.6 61,543 - -0.8 61,543 - -0.0 61,701 + BPHYT_RS36250 0.34 +1.2 61,781 - BPHYT_RS36250 0.56 -0.5
Or see this region's nucleotide sequence