Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33785 and BPHYT_RS33790 are separated by 140 nucleotides BPHYT_RS33790 and BPHYT_RS33795 overlap by 4 nucleotides
BPHYT_RS33785: BPHYT_RS33785 - glycogen debranching protein, at 3,168,134 to 3,170,353
_RS33785
BPHYT_RS33790: BPHYT_RS33790 - malto-oligosyltrehalose trehalohydrolase, at 3,170,494 to 3,172,416
_RS33790
BPHYT_RS33795: BPHYT_RS33795 - 4-alpha-glucanotransferase, at 3,172,413 to 3,174,623
_RS33795
Position (kb) 3170
3171
3172
3173 Strain fitness (log2 ratio) -1
0
1 at 3170.052 kb on + strand, within BPHYT_RS33785 at 3170.052 kb on + strand, within BPHYT_RS33785 at 3170.052 kb on + strand, within BPHYT_RS33785 at 3170.052 kb on + strand, within BPHYT_RS33785 at 3170.134 kb on - strand at 3170.200 kb on + strand at 3170.428 kb on + strand at 3170.564 kb on + strand at 3170.847 kb on + strand, within BPHYT_RS33790 at 3170.888 kb on - strand, within BPHYT_RS33790 at 3170.918 kb on - strand, within BPHYT_RS33790 at 3171.134 kb on - strand, within BPHYT_RS33790 at 3171.160 kb on + strand, within BPHYT_RS33790 at 3171.520 kb on + strand, within BPHYT_RS33790 at 3171.523 kb on + strand, within BPHYT_RS33790 at 3171.523 kb on + strand, within BPHYT_RS33790 at 3171.524 kb on - strand, within BPHYT_RS33790 at 3171.533 kb on - strand, within BPHYT_RS33790 at 3171.811 kb on + strand, within BPHYT_RS33790 at 3171.847 kb on + strand, within BPHYT_RS33790 at 3172.107 kb on + strand, within BPHYT_RS33790 at 3172.324 kb on + strand at 3172.807 kb on + strand, within BPHYT_RS33795 at 3172.854 kb on + strand, within BPHYT_RS33795 at 3172.856 kb on + strand, within BPHYT_RS33795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 3,170,052 + BPHYT_RS33785 0.86 -0.6 3,170,052 + BPHYT_RS33785 0.86 +1.3 3,170,052 + BPHYT_RS33785 0.86 +0.8 3,170,052 + BPHYT_RS33785 0.86 +0.3 3,170,134 - -0.9 3,170,200 + +1.4 3,170,428 + -1.1 3,170,564 + -0.2 3,170,847 + BPHYT_RS33790 0.18 +0.0 3,170,888 - BPHYT_RS33790 0.20 +0.7 3,170,918 - BPHYT_RS33790 0.22 -0.4 3,171,134 - BPHYT_RS33790 0.33 +0.5 3,171,160 + BPHYT_RS33790 0.35 -0.2 3,171,520 + BPHYT_RS33790 0.53 +1.1 3,171,523 + BPHYT_RS33790 0.54 +0.7 3,171,523 + BPHYT_RS33790 0.54 +0.0 3,171,524 - BPHYT_RS33790 0.54 -0.5 3,171,533 - BPHYT_RS33790 0.54 +0.5 3,171,811 + BPHYT_RS33790 0.68 -0.4 3,171,847 + BPHYT_RS33790 0.70 +0.4 3,172,107 + BPHYT_RS33790 0.84 +0.4 3,172,324 + -0.7 3,172,807 + BPHYT_RS33795 0.18 -0.1 3,172,854 + BPHYT_RS33795 0.20 +0.2 3,172,856 + BPHYT_RS33795 0.20 -0.8
Or see this region's nucleotide sequence