Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28050

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28045 and BPHYT_RS28050 are separated by 84 nucleotidesBPHYT_RS28050 and BPHYT_RS28055 overlap by 4 nucleotidesBPHYT_RS28055 and BPHYT_RS28060 are separated by 129 nucleotides BPHYT_RS28045: BPHYT_RS28045 - AraC family transcriptional regulator, at 1,856,181 to 1,857,218 _RS28045 BPHYT_RS28050: BPHYT_RS28050 - serine protease, at 1,857,303 to 1,858,916 _RS28050 BPHYT_RS28055: BPHYT_RS28055 - membrane protein, at 1,858,913 to 1,859,686 _RS28055 BPHYT_RS28060: BPHYT_RS28060 - hypothetical protein, at 1,859,816 to 1,860,073 _RS28060 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1at 1856.337 kb on + strand, within BPHYT_RS28045at 1856.338 kb on - strand, within BPHYT_RS28045at 1856.506 kb on + strand, within BPHYT_RS28045at 1856.507 kb on - strand, within BPHYT_RS28045at 1856.761 kb on - strand, within BPHYT_RS28045at 1856.761 kb on - strand, within BPHYT_RS28045at 1856.862 kb on + strand, within BPHYT_RS28045at 1857.008 kb on + strand, within BPHYT_RS28045at 1857.224 kb on - strandat 1857.271 kb on + strandat 1857.711 kb on + strand, within BPHYT_RS28050at 1857.711 kb on + strand, within BPHYT_RS28050at 1857.711 kb on + strand, within BPHYT_RS28050at 1857.711 kb on + strand, within BPHYT_RS28050at 1857.712 kb on - strand, within BPHYT_RS28050at 1857.712 kb on - strand, within BPHYT_RS28050at 1858.323 kb on + strand, within BPHYT_RS28050at 1858.323 kb on + strand, within BPHYT_RS28050at 1858.323 kb on + strand, within BPHYT_RS28050at 1858.324 kb on - strand, within BPHYT_RS28050at 1858.324 kb on - strand, within BPHYT_RS28050at 1858.324 kb on - strand, within BPHYT_RS28050at 1858.324 kb on - strand, within BPHYT_RS28050at 1859.184 kb on - strand, within BPHYT_RS28055at 1859.231 kb on + strand, within BPHYT_RS28055at 1859.232 kb on - strand, within BPHYT_RS28055at 1859.653 kb on - strandat 1859.773 kb on + strandat 1859.804 kb on + strandat 1859.866 kb on + strand, within BPHYT_RS28060at 1859.866 kb on + strand, within BPHYT_RS28060at 1859.867 kb on - strand, within BPHYT_RS28060at 1859.900 kb on + strand, within BPHYT_RS28060at 1859.900 kb on + strand, within BPHYT_RS28060at 1859.901 kb on - strand, within BPHYT_RS28060at 1859.901 kb on - strand, within BPHYT_RS28060

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,856,337 + BPHYT_RS28045 0.15 -0.9
1,856,338 - BPHYT_RS28045 0.15 +0.4
1,856,506 + BPHYT_RS28045 0.31 +0.3
1,856,507 - BPHYT_RS28045 0.31 -1.5
1,856,761 - BPHYT_RS28045 0.56 -1.9
1,856,761 - BPHYT_RS28045 0.56 -1.9
1,856,862 + BPHYT_RS28045 0.66 -1.0
1,857,008 + BPHYT_RS28045 0.80 +1.4
1,857,224 - +1.2
1,857,271 + +0.3
1,857,711 + BPHYT_RS28050 0.25 +0.3
1,857,711 + BPHYT_RS28050 0.25 +0.8
1,857,711 + BPHYT_RS28050 0.25 +0.7
1,857,711 + BPHYT_RS28050 0.25 -0.2
1,857,712 - BPHYT_RS28050 0.25 +1.6
1,857,712 - BPHYT_RS28050 0.25 +0.3
1,858,323 + BPHYT_RS28050 0.63 -0.7
1,858,323 + BPHYT_RS28050 0.63 -1.7
1,858,323 + BPHYT_RS28050 0.63 +0.6
1,858,324 - BPHYT_RS28050 0.63 +0.1
1,858,324 - BPHYT_RS28050 0.63 -0.3
1,858,324 - BPHYT_RS28050 0.63 -0.4
1,858,324 - BPHYT_RS28050 0.63 +0.5
1,859,184 - BPHYT_RS28055 0.35 -0.8
1,859,231 + BPHYT_RS28055 0.41 -0.8
1,859,232 - BPHYT_RS28055 0.41 +0.7
1,859,653 - -0.2
1,859,773 + +1.3
1,859,804 + +0.0
1,859,866 + BPHYT_RS28060 0.19 +0.2
1,859,866 + BPHYT_RS28060 0.19 -0.1
1,859,867 - BPHYT_RS28060 0.20 +0.1
1,859,900 + BPHYT_RS28060 0.33 +0.1
1,859,900 + BPHYT_RS28060 0.33 -0.5
1,859,901 - BPHYT_RS28060 0.33 +0.2
1,859,901 - BPHYT_RS28060 0.33 -1.2

Or see this region's nucleotide sequence