Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23900 and BPHYT_RS23905 are separated by 30 nucleotides BPHYT_RS23905 and BPHYT_RS23910 overlap by 1 nucleotides BPHYT_RS23910 and BPHYT_RS23915 overlap by 1 nucleotides
BPHYT_RS23900: BPHYT_RS23900 - LysR family transcriptional regulator, at 928,800 to 929,738
_RS23900
BPHYT_RS23905: BPHYT_RS23905 - malonate decarboxylase subunit epsilon, at 929,769 to 930,701
_RS23905
BPHYT_RS23910: BPHYT_RS23910 - phosphoribosyl-dephospho-CoA transferase, at 930,701 to 931,399
_RS23910
BPHYT_RS23915: BPHYT_RS23915 - malonate decarboxylase subunit gamma, at 931,399 to 932,217
_RS23915
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 929.105 kb on + strand, within BPHYT_RS23900 at 929.106 kb on - strand, within BPHYT_RS23900 at 929.559 kb on + strand, within BPHYT_RS23900 at 929.559 kb on + strand, within BPHYT_RS23900 at 929.628 kb on + strand, within BPHYT_RS23900 at 929.629 kb on - strand, within BPHYT_RS23900 at 929.698 kb on - strand at 930.007 kb on + strand, within BPHYT_RS23905 at 930.038 kb on - strand, within BPHYT_RS23905 at 930.038 kb on - strand, within BPHYT_RS23905 at 930.576 kb on - strand, within BPHYT_RS23905 at 931.139 kb on + strand, within BPHYT_RS23910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 929,105 + BPHYT_RS23900 0.32 -0.2 929,106 - BPHYT_RS23900 0.33 +0.0 929,559 + BPHYT_RS23900 0.81 -0.1 929,559 + BPHYT_RS23900 0.81 -0.7 929,628 + BPHYT_RS23900 0.88 +0.7 929,629 - BPHYT_RS23900 0.88 -0.9 929,698 - +0.1 930,007 + BPHYT_RS23905 0.26 -4.1 930,038 - BPHYT_RS23905 0.29 -1.2 930,038 - BPHYT_RS23905 0.29 -0.6 930,576 - BPHYT_RS23905 0.86 -0.5 931,139 + BPHYT_RS23910 0.63 -1.6
Or see this region's nucleotide sequence