Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22995

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22990 and BPHYT_RS22995 are separated by 51 nucleotidesBPHYT_RS22995 and BPHYT_RS23000 are separated by 28 nucleotides BPHYT_RS22990: BPHYT_RS22990 - nucleobase:cation symporter, at 717,761 to 719,089 _RS22990 BPHYT_RS22995: BPHYT_RS22995 - porin, at 719,141 to 720,247 _RS22995 BPHYT_RS23000: BPHYT_RS23000 - molybdopterin-dependent oxidoreductase, at 720,276 to 720,872 _RS23000 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 718.785 kb on - strand, within BPHYT_RS22990at 718.899 kb on - strand, within BPHYT_RS22990at 718.899 kb on - strand, within BPHYT_RS22990at 719.238 kb on - strandat 719.265 kb on - strand, within BPHYT_RS22995at 719.294 kb on + strand, within BPHYT_RS22995at 719.550 kb on + strand, within BPHYT_RS22995at 719.551 kb on - strand, within BPHYT_RS22995at 719.551 kb on - strand, within BPHYT_RS22995at 719.741 kb on + strand, within BPHYT_RS22995at 719.741 kb on + strand, within BPHYT_RS22995at 719.850 kb on + strand, within BPHYT_RS22995at 720.101 kb on + strand, within BPHYT_RS22995at 720.102 kb on - strand, within BPHYT_RS22995at 720.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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718,785 - BPHYT_RS22990 0.77 +0.2
718,899 - BPHYT_RS22990 0.86 -0.3
718,899 - BPHYT_RS22990 0.86 -0.1
719,238 - +0.4
719,265 - BPHYT_RS22995 0.11 -0.1
719,294 + BPHYT_RS22995 0.14 -0.5
719,550 + BPHYT_RS22995 0.37 -0.4
719,551 - BPHYT_RS22995 0.37 +1.2
719,551 - BPHYT_RS22995 0.37 -0.2
719,741 + BPHYT_RS22995 0.54 +0.5
719,741 + BPHYT_RS22995 0.54 +5.3
719,850 + BPHYT_RS22995 0.64 -2.1
720,101 + BPHYT_RS22995 0.87 +0.1
720,102 - BPHYT_RS22995 0.87 +2.0
720,973 + -0.2

Or see this region's nucleotide sequence