Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22905 and BPHYT_RS22910 are separated by 24 nucleotides BPHYT_RS22910 and BPHYT_RS22915 are separated by 46 nucleotides BPHYT_RS22915 and BPHYT_RS22920 are separated by 54 nucleotides
BPHYT_RS22905: BPHYT_RS22905 - secretin, at 697,566 to 699,353
_RS22905
BPHYT_RS22910: BPHYT_RS22910 - hypothetical protein, at 699,378 to 699,671
_RS22910
BPHYT_RS22915: BPHYT_RS22915 - pilus assembly protein CpaE, at 699,718 to 700,920
_RS22915
BPHYT_RS22920: BPHYT_RS22920 - pilus assembly protein CpaF, at 700,975 to 702,357
_RS22920
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 698.769 kb on + strand, within BPHYT_RS22905 at 698.770 kb on - strand, within BPHYT_RS22905 at 699.186 kb on + strand at 699.352 kb on - strand at 699.594 kb on + strand, within BPHYT_RS22910 at 699.715 kb on - strand at 700.180 kb on + strand, within BPHYT_RS22915 at 700.353 kb on - strand, within BPHYT_RS22915 at 701.357 kb on + strand, within BPHYT_RS22920 at 701.357 kb on + strand at 701.358 kb on - strand, within BPHYT_RS22920 at 701.358 kb on - strand, within BPHYT_RS22920 at 701.358 kb on - strand, within BPHYT_RS22920 at 701.360 kb on - strand, within BPHYT_RS22920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 698,769 + BPHYT_RS22905 0.67 +1.1 698,770 - BPHYT_RS22905 0.67 +1.7 699,186 + -2.4 699,352 - -1.2 699,594 + BPHYT_RS22910 0.73 -2.9 699,715 - +0.9 700,180 + BPHYT_RS22915 0.38 +0.1 700,353 - BPHYT_RS22915 0.53 -0.3 701,357 + BPHYT_RS22920 0.28 +0.1 701,357 + +0.1 701,358 - BPHYT_RS22920 0.28 -0.5 701,358 - BPHYT_RS22920 0.28 +0.3 701,358 - BPHYT_RS22920 0.28 -0.5 701,360 - BPHYT_RS22920 0.28 -0.3
Or see this region's nucleotide sequence