Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03235 and BPHYT_RS03240 are separated by 140 nucleotides BPHYT_RS03240 and BPHYT_RS03245 are separated by 148 nucleotides BPHYT_RS03245 and BPHYT_RS03250 are separated by 238 nucleotides
BPHYT_RS03235: BPHYT_RS03235 - enoyl-CoA hydratase, at 727,412 to 728,182
_RS03235
BPHYT_RS03240: BPHYT_RS03240 - formate dehydrogenase accessory protein FdhD, at 728,323 to 729,162
_RS03240
BPHYT_RS03245: BPHYT_RS03245 - hypothetical protein, at 729,311 to 729,787
_RS03245
BPHYT_RS03250: BPHYT_RS03250 - diguanylate cyclase, at 730,026 to 733,136
_RS03250
Position (kb) 728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 727.423 kb on + strand at 727.493 kb on - strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 727.505 kb on + strand, within BPHYT_RS03235 at 728.205 kb on + strand at 728.346 kb on + strand at 728.347 kb on - strand at 728.360 kb on + strand at 728.361 kb on - strand at 728.493 kb on - strand, within BPHYT_RS03240 at 728.493 kb on - strand, within BPHYT_RS03240 at 729.165 kb on + strand at 729.166 kb on - strand at 729.166 kb on - strand at 729.166 kb on - strand at 729.249 kb on + strand at 729.258 kb on - strand at 729.258 kb on - strand at 729.306 kb on + strand at 729.306 kb on + strand at 729.306 kb on + strand at 729.307 kb on - strand at 729.307 kb on - strand at 729.307 kb on - strand at 729.307 kb on - strand at 729.307 kb on - strand at 729.374 kb on + strand, within BPHYT_RS03245 at 729.374 kb on + strand, within BPHYT_RS03245 at 729.374 kb on + strand, within BPHYT_RS03245 at 729.374 kb on + strand, within BPHYT_RS03245 at 729.375 kb on - strand, within BPHYT_RS03245 at 729.625 kb on + strand, within BPHYT_RS03245 at 729.626 kb on - strand, within BPHYT_RS03245 at 729.705 kb on - strand, within BPHYT_RS03245 at 729.786 kb on - strand at 729.786 kb on - strand at 729.789 kb on + strand at 729.789 kb on + strand at 729.789 kb on + strand at 729.789 kb on + strand at 729.820 kb on + strand at 729.820 kb on + strand at 729.821 kb on - strand at 729.824 kb on + strand at 729.859 kb on - strand at 729.896 kb on + strand at 729.943 kb on + strand at 730.107 kb on + strand at 730.107 kb on + strand at 730.108 kb on - strand at 730.109 kb on + strand at 730.110 kb on - strand at 730.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 727,423 + -0.1 727,493 - BPHYT_RS03235 0.11 -0.4 727,505 + BPHYT_RS03235 0.12 -0.6 727,505 + BPHYT_RS03235 0.12 -0.4 728,205 + +0.9 728,346 + -1.0 728,347 - +0.5 728,360 + -0.6 728,361 - +0.8 728,493 - BPHYT_RS03240 0.20 -1.1 728,493 - BPHYT_RS03240 0.20 -0.6 729,165 + +0.6 729,166 - -1.0 729,166 - +0.0 729,166 - -0.3 729,249 + -0.4 729,258 - -0.5 729,258 - +0.5 729,306 + +0.0 729,306 + -0.2 729,306 + +0.7 729,307 - +0.3 729,307 - -0.6 729,307 - -0.1 729,307 - -0.4 729,307 - -0.2 729,374 + BPHYT_RS03245 0.13 +0.6 729,374 + BPHYT_RS03245 0.13 -0.3 729,374 + BPHYT_RS03245 0.13 -0.6 729,374 + BPHYT_RS03245 0.13 +0.3 729,375 - BPHYT_RS03245 0.13 +0.2 729,625 + BPHYT_RS03245 0.66 +0.4 729,626 - BPHYT_RS03245 0.66 +1.5 729,705 - BPHYT_RS03245 0.83 +0.1 729,786 - +0.8 729,786 - -3.4 729,789 + -0.3 729,789 + -0.4 729,789 + +1.5 729,789 + -1.1 729,820 + +0.5 729,820 + -0.1 729,821 - -0.7 729,824 + +0.1 729,859 - +0.5 729,896 + -0.4 729,943 + +3.5 730,107 + -0.5 730,107 + -0.1 730,108 - +1.5 730,109 + +0.2 730,110 - -1.1 730,110 - +0.3
Or see this region's nucleotide sequence