Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03220 and BPHYT_RS03225 are separated by 128 nucleotides BPHYT_RS03225 and BPHYT_RS03230 are separated by 189 nucleotides
BPHYT_RS03220: BPHYT_RS03220 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 721,553 to 723,340
_RS03220
BPHYT_RS03225: BPHYT_RS03225 - 3-hydroxyacyl-CoA dehydrogenase, at 723,469 to 725,904
_RS03225
BPHYT_RS03230: BPHYT_RS03230 - acetyl-CoA acetyltransferase, at 726,094 to 727,293
_RS03230
Position (kb) 723
724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 722.486 kb on + strand, within BPHYT_RS03220 at 722.609 kb on - strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.801 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.843 kb on + strand, within BPHYT_RS03220 at 722.844 kb on - strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 722.873 kb on + strand, within BPHYT_RS03220 at 723.190 kb on + strand at 723.215 kb on + strand at 723.450 kb on - strand at 723.494 kb on + strand at 723.925 kb on + strand, within BPHYT_RS03225 at 723.926 kb on - strand, within BPHYT_RS03225 at 724.342 kb on + strand, within BPHYT_RS03225 at 724.393 kb on + strand, within BPHYT_RS03225 at 724.393 kb on + strand, within BPHYT_RS03225 at 724.528 kb on + strand, within BPHYT_RS03225 at 724.528 kb on + strand, within BPHYT_RS03225 at 724.529 kb on - strand, within BPHYT_RS03225 at 724.529 kb on - strand, within BPHYT_RS03225 at 724.534 kb on + strand at 724.681 kb on - strand, within BPHYT_RS03225 at 724.764 kb on + strand, within BPHYT_RS03225 at 724.764 kb on + strand, within BPHYT_RS03225 at 724.889 kb on - strand, within BPHYT_RS03225 at 725.050 kb on + strand, within BPHYT_RS03225 at 725.050 kb on + strand, within BPHYT_RS03225 at 725.051 kb on - strand, within BPHYT_RS03225 at 725.051 kb on - strand, within BPHYT_RS03225 at 725.221 kb on + strand, within BPHYT_RS03225 at 725.902 kb on + strand at 725.923 kb on + strand at 725.997 kb on + strand at 726.012 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.118 kb on + strand at 726.119 kb on - strand at 726.119 kb on - strand at 726.138 kb on + strand at 726.139 kb on - strand at 726.346 kb on - strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.492 kb on + strand, within BPHYT_RS03230 at 726.493 kb on - strand, within BPHYT_RS03230 at 726.513 kb on + strand, within BPHYT_RS03230 at 726.548 kb on - strand, within BPHYT_RS03230 at 726.849 kb on + strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230 at 726.850 kb on - strand, within BPHYT_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 722,486 + BPHYT_RS03220 0.52 -0.7 722,609 - BPHYT_RS03220 0.59 +0.2 722,801 + BPHYT_RS03220 0.70 +1.1 722,801 + BPHYT_RS03220 0.70 +0.4 722,843 + BPHYT_RS03220 0.72 -0.4 722,843 + BPHYT_RS03220 0.72 +1.6 722,843 + BPHYT_RS03220 0.72 +1.4 722,843 + BPHYT_RS03220 0.72 +1.8 722,844 - BPHYT_RS03220 0.72 -0.4 722,873 + BPHYT_RS03220 0.74 +0.5 722,873 + BPHYT_RS03220 0.74 -0.4 723,190 + +1.0 723,215 + -0.5 723,450 - +3.2 723,494 + -0.8 723,925 + BPHYT_RS03225 0.19 +1.0 723,926 - BPHYT_RS03225 0.19 +0.8 724,342 + BPHYT_RS03225 0.36 -0.8 724,393 + BPHYT_RS03225 0.38 -0.3 724,393 + BPHYT_RS03225 0.38 -2.1 724,528 + BPHYT_RS03225 0.43 +0.2 724,528 + BPHYT_RS03225 0.43 +0.7 724,529 - BPHYT_RS03225 0.44 +0.4 724,529 - BPHYT_RS03225 0.44 -0.4 724,534 + +2.2 724,681 - BPHYT_RS03225 0.50 -0.0 724,764 + BPHYT_RS03225 0.53 -0.1 724,764 + BPHYT_RS03225 0.53 +0.0 724,889 - BPHYT_RS03225 0.58 -0.5 725,050 + BPHYT_RS03225 0.65 +1.0 725,050 + BPHYT_RS03225 0.65 -0.1 725,051 - BPHYT_RS03225 0.65 -0.3 725,051 - BPHYT_RS03225 0.65 +0.1 725,221 + BPHYT_RS03225 0.72 -0.2 725,902 + +0.8 725,923 + -0.1 725,997 + -0.1 726,012 + -0.3 726,118 + +1.8 726,118 + +0.1 726,118 + +1.8 726,119 - +0.4 726,119 - -0.5 726,138 + -0.0 726,139 - +1.2 726,346 - BPHYT_RS03230 0.21 -0.8 726,492 + BPHYT_RS03230 0.33 +1.2 726,492 + BPHYT_RS03230 0.33 +2.1 726,493 - BPHYT_RS03230 0.33 +0.8 726,513 + BPHYT_RS03230 0.35 -0.3 726,548 - BPHYT_RS03230 0.38 -0.4 726,849 + BPHYT_RS03230 0.63 -0.2 726,850 - BPHYT_RS03230 0.63 -1.8 726,850 - BPHYT_RS03230 0.63 -0.2 726,850 - BPHYT_RS03230 0.63 +0.7
Or see this region's nucleotide sequence