Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02810 and BPHYT_RS02815 are separated by 240 nucleotides BPHYT_RS02815 and BPHYT_RS02820 are separated by 112 nucleotides BPHYT_RS02820 and BPHYT_RS02825 are separated by 63 nucleotides
BPHYT_RS02810: BPHYT_RS02810 - cell division protein FtsY, at 629,939 to 631,099
_RS02810
BPHYT_RS02815: BPHYT_RS02815 - methyltransferase, at 631,340 to 631,954
_RS02815
BPHYT_RS02820: BPHYT_RS02820 - phosphopantetheine adenylyltransferase, at 632,067 to 632,582
_RS02820
BPHYT_RS02825: BPHYT_RS02825 - ferredoxin, at 632,646 to 632,903
_RS02825
Position (kb) 631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 631.233 kb on + strand at 631.233 kb on + strand at 631.327 kb on + strand at 631.408 kb on + strand at 631.408 kb on + strand, within BPHYT_RS02815 at 631.744 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.830 kb on - strand, within BPHYT_RS02815 at 631.833 kb on + strand, within BPHYT_RS02815 at 631.834 kb on - strand, within BPHYT_RS02815 at 631.903 kb on + strand at 631.952 kb on + strand at 632.645 kb on + strand at 632.645 kb on + strand at 632.796 kb on - strand, within BPHYT_RS02825 at 632.796 kb on - strand, within BPHYT_RS02825 at 632.819 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.871 kb on + strand, within BPHYT_RS02825 at 632.907 kb on - strand at 632.935 kb on + strand at 632.935 kb on + strand at 632.936 kb on - strand at 632.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 631,233 + -0.4 631,233 + +0.3 631,327 + -0.7 631,408 + -2.0 631,408 + BPHYT_RS02815 0.11 -0.2 631,744 - BPHYT_RS02815 0.66 +0.2 631,830 - BPHYT_RS02815 0.80 -0.8 631,830 - BPHYT_RS02815 0.80 -0.4 631,833 + BPHYT_RS02815 0.80 -1.8 631,834 - BPHYT_RS02815 0.80 +0.8 631,903 + +0.2 631,952 + +0.3 632,645 + -0.6 632,645 + +3.2 632,796 - BPHYT_RS02825 0.58 +0.2 632,796 - BPHYT_RS02825 0.58 +1.2 632,819 + BPHYT_RS02825 0.67 +0.4 632,871 + BPHYT_RS02825 0.87 -0.2 632,871 + BPHYT_RS02825 0.87 -0.1 632,907 - -0.3 632,935 + -0.8 632,935 + -2.2 632,936 - +0.3 632,936 - -0.6
Or see this region's nucleotide sequence