Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01275 and BPHYT_RS01280 are separated by 254 nucleotides BPHYT_RS01280 and BPHYT_RS01285 are separated by 663 nucleotides
BPHYT_RS01275: BPHYT_RS01275 - DNA-directed DNA polymerase, at 292,094 to 293,251
_RS01275
BPHYT_RS01280: BPHYT_RS01280 - hypothetical protein, at 293,506 to 293,739
_RS01280
BPHYT_RS01285: BPHYT_RS01285 - polyketide cyclase, at 294,403 to 294,813
_RS01285
Position (kb) 293
294 Strain fitness (log2 ratio) -2
-1
0
1
2 at 292.534 kb on - strand, within BPHYT_RS01275 at 292.534 kb on - strand, within BPHYT_RS01275 at 292.800 kb on - strand, within BPHYT_RS01275 at 292.863 kb on + strand, within BPHYT_RS01275 at 292.936 kb on - strand, within BPHYT_RS01275 at 292.936 kb on - strand, within BPHYT_RS01275 at 293.044 kb on - strand, within BPHYT_RS01275 at 293.076 kb on + strand, within BPHYT_RS01275 at 293.077 kb on - strand, within BPHYT_RS01275 at 293.338 kb on + strand at 293.339 kb on - strand at 293.340 kb on + strand at 293.340 kb on + strand at 293.341 kb on - strand at 293.341 kb on - strand at 293.354 kb on - strand at 293.354 kb on - strand at 293.460 kb on + strand at 293.489 kb on + strand at 293.687 kb on - strand, within BPHYT_RS01280 at 293.779 kb on + strand at 293.780 kb on - strand at 294.040 kb on + strand at 294.067 kb on - strand at 294.166 kb on + strand at 294.167 kb on - strand at 294.183 kb on - strand at 294.210 kb on - strand at 294.301 kb on + strand at 294.302 kb on - strand at 294.306 kb on - strand at 294.337 kb on - strand at 294.383 kb on + strand at 294.383 kb on + strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.384 kb on - strand at 294.439 kb on + strand at 294.439 kb on + strand at 294.494 kb on + strand, within BPHYT_RS01285 at 294.494 kb on + strand, within BPHYT_RS01285 at 294.496 kb on + strand, within BPHYT_RS01285 at 294.497 kb on - strand, within BPHYT_RS01285 at 294.497 kb on - strand, within BPHYT_RS01285 at 294.497 kb on - strand at 294.541 kb on + strand, within BPHYT_RS01285 at 294.542 kb on - strand, within BPHYT_RS01285 at 294.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 292,534 - BPHYT_RS01275 0.38 +1.1 292,534 - BPHYT_RS01275 0.38 -0.8 292,800 - BPHYT_RS01275 0.61 +0.6 292,863 + BPHYT_RS01275 0.66 +0.4 292,936 - BPHYT_RS01275 0.73 -1.3 292,936 - BPHYT_RS01275 0.73 -0.2 293,044 - BPHYT_RS01275 0.82 +0.5 293,076 + BPHYT_RS01275 0.85 -0.4 293,077 - BPHYT_RS01275 0.85 +0.4 293,338 + -1.1 293,339 - +0.3 293,340 + -0.2 293,340 + -0.5 293,341 - -1.3 293,341 - +1.4 293,354 - +0.1 293,354 - -0.5 293,460 + +0.2 293,489 + -1.1 293,687 - BPHYT_RS01280 0.77 -0.9 293,779 + -0.6 293,780 - -0.6 294,040 + +0.1 294,067 - +0.1 294,166 + +0.7 294,167 - +1.1 294,183 - +0.1 294,210 - -1.3 294,301 + -1.4 294,302 - -0.6 294,306 - +0.8 294,337 - -0.9 294,383 + -0.9 294,383 + -0.4 294,384 - -2.2 294,384 - -1.3 294,384 - -0.3 294,384 - -0.3 294,384 - -0.5 294,384 - -0.7 294,439 + -1.3 294,439 + -0.8 294,494 + BPHYT_RS01285 0.22 -0.1 294,494 + BPHYT_RS01285 0.22 +1.4 294,496 + BPHYT_RS01285 0.23 -0.8 294,497 - BPHYT_RS01285 0.23 -0.8 294,497 - BPHYT_RS01285 0.23 -0.9 294,497 - +0.6 294,541 + BPHYT_RS01285 0.34 -0.2 294,542 - BPHYT_RS01285 0.34 -0.0 294,640 + +2.6
Or see this region's nucleotide sequence