Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00545 and BPHYT_RS00550 are separated by 301 nucleotides BPHYT_RS00550 and BPHYT_RS00555 are separated by 772 nucleotides
BPHYT_RS00545: BPHYT_RS00545 - LysR family transcriptional regulator, at 131,514 to 132,455
_RS00545
BPHYT_RS00550: BPHYT_RS00550 - excinuclease ABC subunit B, at 132,757 to 134,736
_RS00550
BPHYT_RS00555: BPHYT_RS00555 - hypothetical protein, at 135,509 to 135,910
_RS00555
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 131.777 kb on + strand, within BPHYT_RS00545 at 131.804 kb on - strand, within BPHYT_RS00545 at 131.804 kb on - strand, within BPHYT_RS00545 at 131.880 kb on - strand, within BPHYT_RS00545 at 131.949 kb on + strand, within BPHYT_RS00545 at 132.047 kb on + strand, within BPHYT_RS00545 at 132.047 kb on + strand, within BPHYT_RS00545 at 132.148 kb on - strand, within BPHYT_RS00545 at 132.443 kb on + strand at 132.516 kb on + strand at 132.526 kb on + strand at 132.537 kb on - strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.610 kb on - strand at 132.610 kb on - strand at 132.768 kb on + strand at 132.792 kb on + strand at 132.793 kb on - strand at 132.843 kb on - strand at 132.901 kb on - strand at 132.979 kb on + strand, within BPHYT_RS00550 at 133.384 kb on + strand, within BPHYT_RS00550 at 133.385 kb on - strand, within BPHYT_RS00550 at 133.386 kb on + strand, within BPHYT_RS00550 at 133.387 kb on - strand, within BPHYT_RS00550 at 133.481 kb on - strand, within BPHYT_RS00550 at 133.481 kb on - strand, within BPHYT_RS00550 at 133.547 kb on + strand, within BPHYT_RS00550 at 133.685 kb on - strand, within BPHYT_RS00550 at 133.685 kb on - strand, within BPHYT_RS00550 at 133.694 kb on - strand, within BPHYT_RS00550 at 133.741 kb on + strand, within BPHYT_RS00550 at 133.810 kb on + strand, within BPHYT_RS00550 at 133.813 kb on - strand, within BPHYT_RS00550 at 133.813 kb on - strand, within BPHYT_RS00550 at 134.052 kb on + strand, within BPHYT_RS00550 at 134.052 kb on + strand, within BPHYT_RS00550 at 134.053 kb on - strand, within BPHYT_RS00550 at 134.199 kb on - strand, within BPHYT_RS00550 at 134.819 kb on + strand at 134.996 kb on + strand at 134.997 kb on - strand at 134.997 kb on - strand at 135.114 kb on - strand at 135.120 kb on + strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.121 kb on - strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.124 kb on + strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.459 kb on - strand at 135.463 kb on - strand at 135.526 kb on - strand at 135.558 kb on + strand, within BPHYT_RS00555 at 135.558 kb on + strand, within BPHYT_RS00555 at 135.559 kb on - strand, within BPHYT_RS00555 at 135.665 kb on - strand, within BPHYT_RS00555 at 135.681 kb on + strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555 at 135.693 kb on - strand, within BPHYT_RS00555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 131,777 + BPHYT_RS00545 0.28 -0.2 131,804 - BPHYT_RS00545 0.31 +0.2 131,804 - BPHYT_RS00545 0.31 -1.4 131,880 - BPHYT_RS00545 0.39 -0.4 131,949 + BPHYT_RS00545 0.46 +2.0 132,047 + BPHYT_RS00545 0.57 -0.2 132,047 + BPHYT_RS00545 0.57 +0.2 132,148 - BPHYT_RS00545 0.67 -1.0 132,443 + +0.3 132,516 + +2.0 132,526 + +0.1 132,537 - -0.2 132,608 - -0.4 132,608 - -0.2 132,610 - -0.1 132,610 - -1.0 132,768 + +0.6 132,792 + -0.3 132,793 - -0.2 132,843 - +0.1 132,901 - -0.7 132,979 + BPHYT_RS00550 0.11 -0.1 133,384 + BPHYT_RS00550 0.32 -0.1 133,385 - BPHYT_RS00550 0.32 +0.4 133,386 + BPHYT_RS00550 0.32 -1.4 133,387 - BPHYT_RS00550 0.32 +0.5 133,481 - BPHYT_RS00550 0.37 +0.3 133,481 - BPHYT_RS00550 0.37 -0.3 133,547 + BPHYT_RS00550 0.40 -0.3 133,685 - BPHYT_RS00550 0.47 +1.5 133,685 - BPHYT_RS00550 0.47 +0.0 133,694 - BPHYT_RS00550 0.47 -1.0 133,741 + BPHYT_RS00550 0.50 +1.0 133,810 + BPHYT_RS00550 0.53 +0.6 133,813 - BPHYT_RS00550 0.53 -0.9 133,813 - BPHYT_RS00550 0.53 +1.2 134,052 + BPHYT_RS00550 0.65 +0.5 134,052 + BPHYT_RS00550 0.65 +1.1 134,053 - BPHYT_RS00550 0.65 -1.3 134,199 - BPHYT_RS00550 0.73 +0.0 134,819 + -0.2 134,996 + -0.4 134,997 - -0.4 134,997 - +3.2 135,114 - +0.6 135,120 + +0.0 135,121 - -0.3 135,121 - +3.1 135,121 - +0.1 135,121 - -1.8 135,124 + +0.2 135,124 + -0.3 135,124 + +1.2 135,125 - +0.4 135,125 - -0.9 135,125 - -0.5 135,125 - +0.1 135,459 - +0.0 135,463 - -0.9 135,526 - +0.0 135,558 + BPHYT_RS00555 0.12 -0.1 135,558 + BPHYT_RS00555 0.12 -0.4 135,559 - BPHYT_RS00555 0.12 -0.3 135,665 - BPHYT_RS00555 0.39 +0.4 135,681 + BPHYT_RS00555 0.43 -2.2 135,693 - BPHYT_RS00555 0.46 +0.5 135,693 - BPHYT_RS00555 0.46 -0.5 135,693 - BPHYT_RS00555 0.46 -0.1
Or see this region's nucleotide sequence