Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23735 and BPHYT_RS23740 are separated by 185 nucleotides BPHYT_RS23740 and BPHYT_RS23745 are separated by 277 nucleotides BPHYT_RS23745 and BPHYT_RS23750 are separated by 202 nucleotides
BPHYT_RS23735: BPHYT_RS23735 - ABC transporter, at 892,292 to 893,851
_RS23735
BPHYT_RS23740: BPHYT_RS23740 - AraC family transcriptional regulator, at 894,037 to 894,792
_RS23740
BPHYT_RS23745: BPHYT_RS23745 - hypothetical protein, at 895,070 to 895,306
_RS23745
BPHYT_RS23750: BPHYT_RS23750 - phosphonate ABC transporter substrate-binding protein, at 895,509 to 896,597
_RS23750
Position (kb) 894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.146 kb on - strand, within BPHYT_RS23735 at 893.722 kb on + strand at 893.829 kb on - strand at 893.934 kb on + strand at 893.934 kb on + strand at 893.934 kb on + strand at 893.934 kb on + strand at 893.935 kb on - strand at 893.969 kb on + strand at 893.970 kb on - strand at 893.973 kb on - strand at 893.973 kb on - strand at 893.973 kb on - strand at 894.035 kb on - strand at 894.035 kb on - strand at 894.035 kb on - strand at 894.061 kb on + strand at 894.061 kb on + strand at 894.062 kb on - strand at 894.062 kb on - strand at 894.062 kb on - strand at 894.238 kb on - strand, within BPHYT_RS23740 at 894.388 kb on + strand, within BPHYT_RS23740 at 894.389 kb on - strand, within BPHYT_RS23740 at 894.473 kb on + strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.583 kb on + strand, within BPHYT_RS23740 at 894.835 kb on - strand at 894.939 kb on - strand at 894.981 kb on + strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.061 kb on - strand at 895.305 kb on - strand at 895.635 kb on + strand, within BPHYT_RS23750 at 895.635 kb on + strand, within BPHYT_RS23750 at 895.662 kb on + strand, within BPHYT_RS23750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 893,146 - BPHYT_RS23735 0.55 -0.1 893,722 + -1.5 893,829 - -0.5 893,934 + -0.7 893,934 + +2.2 893,934 + -2.7 893,934 + -0.1 893,935 - -0.4 893,969 + -0.1 893,970 - +0.1 893,973 - +0.5 893,973 - +0.5 893,973 - +1.1 894,035 - +0.9 894,035 - -0.7 894,035 - -2.0 894,061 + -0.3 894,061 + -0.7 894,062 - +0.1 894,062 - +1.1 894,062 - -0.7 894,238 - BPHYT_RS23740 0.27 +0.5 894,388 + BPHYT_RS23740 0.46 -1.3 894,389 - BPHYT_RS23740 0.47 -0.9 894,473 + BPHYT_RS23740 0.58 -0.8 894,474 - BPHYT_RS23740 0.58 -0.9 894,474 - BPHYT_RS23740 0.58 -0.7 894,474 - BPHYT_RS23740 0.58 -0.2 894,583 + BPHYT_RS23740 0.72 -0.3 894,835 - +0.7 894,939 - +1.3 894,981 + +0.1 895,040 - -0.5 895,040 - +0.1 895,040 - -0.3 895,061 - +0.9 895,305 - -0.7 895,635 + BPHYT_RS23750 0.12 +0.6 895,635 + BPHYT_RS23750 0.12 +0.9 895,662 + BPHYT_RS23750 0.14 +0.1
Or see this region's nucleotide sequence