Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23720 and BPHYT_RS23725 are separated by 329 nucleotides BPHYT_RS23725 and BPHYT_RS23730 are separated by 261 nucleotides
BPHYT_RS23720: BPHYT_RS23720 - nH(3)-dependent NAD(+) synthetase, at 888,848 to 889,708
_RS23720
BPHYT_RS23725: BPHYT_RS23725 - hypothetical protein, at 890,038 to 891,024
_RS23725
BPHYT_RS23730: BPHYT_RS23730 - multidrug DMT transporter permease, at 891,286 to 892,158
_RS23730
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 889.071 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.246 kb on - strand, within BPHYT_RS23720 at 889.276 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.566 kb on + strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.594 kb on - strand, within BPHYT_RS23720 at 889.804 kb on - strand at 889.823 kb on + strand at 889.824 kb on - strand at 889.878 kb on + strand at 889.882 kb on - strand at 889.927 kb on + strand at 889.985 kb on + strand at 889.986 kb on - strand at 890.038 kb on - strand at 890.342 kb on - strand, within BPHYT_RS23725 at 890.402 kb on - strand, within BPHYT_RS23725 at 890.449 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.818 kb on + strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.863 kb on - strand, within BPHYT_RS23725 at 891.371 kb on + strand at 891.372 kb on - strand at 891.932 kb on + strand, within BPHYT_RS23730 at 891.932 kb on + strand, within BPHYT_RS23730 at 891.959 kb on - strand, within BPHYT_RS23730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 889,071 - BPHYT_RS23720 0.26 +0.4 889,143 - BPHYT_RS23720 0.34 +0.6 889,143 - BPHYT_RS23720 0.34 -0.5 889,143 - BPHYT_RS23720 0.34 -0.3 889,246 - BPHYT_RS23720 0.46 -0.3 889,276 + BPHYT_RS23720 0.50 -0.8 889,314 + BPHYT_RS23720 0.54 -1.1 889,314 + BPHYT_RS23720 0.54 -0.7 889,566 + BPHYT_RS23720 0.83 +0.7 889,567 - BPHYT_RS23720 0.84 +1.7 889,567 - BPHYT_RS23720 0.84 -0.6 889,594 - BPHYT_RS23720 0.87 +2.7 889,804 - +0.1 889,823 + -0.9 889,824 - -0.0 889,878 + -0.3 889,882 - +0.8 889,927 + -0.2 889,985 + +0.2 889,986 - +0.2 890,038 - -0.3 890,342 - BPHYT_RS23725 0.31 +1.1 890,402 - BPHYT_RS23725 0.37 -0.1 890,449 + BPHYT_RS23725 0.42 -1.3 890,524 + BPHYT_RS23725 0.49 -0.7 890,524 + BPHYT_RS23725 0.49 -0.7 890,818 + BPHYT_RS23725 0.79 +0.3 890,840 - BPHYT_RS23725 0.81 -0.3 890,840 - BPHYT_RS23725 0.81 +0.6 890,863 - BPHYT_RS23725 0.84 -0.5 891,371 + -0.3 891,372 - -0.8 891,932 + BPHYT_RS23730 0.74 -0.7 891,932 + BPHYT_RS23730 0.74 -0.8 891,959 - BPHYT_RS23730 0.77 -3.1
Or see this region's nucleotide sequence