Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23705 and BPHYT_RS23710 are separated by 113 nucleotides BPHYT_RS23710 and BPHYT_RS23715 are separated by 443 nucleotides BPHYT_RS23715 and BPHYT_RS23720 are separated by 91 nucleotides
BPHYT_RS23705: BPHYT_RS23705 - hypothetical protein, at 886,929 to 887,582
_RS23705
BPHYT_RS23710: BPHYT_RS23710 - hypothetical protein, at 887,696 to 888,046
_RS23710
BPHYT_RS23715: BPHYT_RS23715 - hypothetical protein, at 888,490 to 888,756
_RS23715
BPHYT_RS23720: BPHYT_RS23720 - nH(3)-dependent NAD(+) synthetase, at 888,848 to 889,708
_RS23720
Position (kb) 888
889 Strain fitness (log2 ratio) -1
0
1
2 at 887.628 kb on - strand at 887.628 kb on - strand at 887.846 kb on + strand, within BPHYT_RS23710 at 888.202 kb on + strand at 888.211 kb on - strand at 888.324 kb on - strand at 888.324 kb on - strand at 889.005 kb on + strand, within BPHYT_RS23720 at 889.071 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.246 kb on - strand, within BPHYT_RS23720 at 889.276 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.566 kb on + strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.594 kb on - strand, within BPHYT_RS23720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 887,628 - -0.1 887,628 - +0.2 887,846 + BPHYT_RS23710 0.43 +0.4 888,202 + -0.8 888,211 - +0.2 888,324 - -0.1 888,324 - +0.1 889,005 + BPHYT_RS23720 0.18 -0.3 889,071 - BPHYT_RS23720 0.26 +0.4 889,143 - BPHYT_RS23720 0.34 +0.6 889,143 - BPHYT_RS23720 0.34 -0.5 889,143 - BPHYT_RS23720 0.34 -0.3 889,246 - BPHYT_RS23720 0.46 -0.3 889,276 + BPHYT_RS23720 0.50 -0.8 889,314 + BPHYT_RS23720 0.54 -1.1 889,314 + BPHYT_RS23720 0.54 -0.7 889,566 + BPHYT_RS23720 0.83 +0.7 889,567 - BPHYT_RS23720 0.84 +1.7 889,567 - BPHYT_RS23720 0.84 -0.6 889,594 - BPHYT_RS23720 0.87 +2.7
Or see this region's nucleotide sequence