Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22590 and BPHYT_RS22595 are separated by 27 nucleotides BPHYT_RS22595 and BPHYT_RS22600 are separated by 302 nucleotides BPHYT_RS22600 and BPHYT_RS22605 are separated by 155 nucleotides BPHYT_RS22605 and BPHYT_RS22610 are separated by 213 nucleotides
BPHYT_RS22590: BPHYT_RS22590 - hypothetical protein, at 627,493 to 627,861
_RS22590
BPHYT_RS22595: BPHYT_RS22595 - hypothetical protein, at 627,889 to 628,107
_RS22595
BPHYT_RS22600: BPHYT_RS22600 - transport protein RbsD/FucU, at 628,410 to 628,874
_RS22600
BPHYT_RS22605: BPHYT_RS22605 - virulence protein, at 629,030 to 629,437
_RS22605
BPHYT_RS22610: BPHYT_RS22610 - quinol oxidase, at 629,651 to 630,082
_RS22610
Position (kb) 628
629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 627.439 kb on + strand at 627.524 kb on - strand at 628.761 kb on + strand, within BPHYT_RS22600 at 628.782 kb on + strand, within BPHYT_RS22600 at 628.783 kb on - strand, within BPHYT_RS22600 at 628.783 kb on - strand, within BPHYT_RS22600 at 628.816 kb on - strand, within BPHYT_RS22600 at 628.873 kb on - strand at 628.929 kb on + strand at 629.110 kb on + strand, within BPHYT_RS22605 at 629.110 kb on + strand, within BPHYT_RS22605 at 629.111 kb on - strand, within BPHYT_RS22605 at 629.111 kb on - strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.381 kb on + strand, within BPHYT_RS22605 at 629.424 kb on - strand at 629.433 kb on + strand at 629.435 kb on + strand at 629.436 kb on - strand at 629.436 kb on - strand at 629.436 kb on - strand at 629.554 kb on + strand at 629.630 kb on - strand at 629.638 kb on - strand at 629.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 627,439 + -0.8 627,524 - -0.5 628,761 + BPHYT_RS22600 0.75 +0.2 628,782 + BPHYT_RS22600 0.80 +1.2 628,783 - BPHYT_RS22600 0.80 +0.7 628,783 - BPHYT_RS22600 0.80 +2.1 628,816 - BPHYT_RS22600 0.87 +1.7 628,873 - +0.2 628,929 + +1.1 629,110 + BPHYT_RS22605 0.20 -0.0 629,110 + BPHYT_RS22605 0.20 -0.3 629,111 - BPHYT_RS22605 0.20 +0.3 629,111 - BPHYT_RS22605 0.20 -1.0 629,381 + BPHYT_RS22605 0.86 -0.7 629,381 + BPHYT_RS22605 0.86 +0.2 629,381 + BPHYT_RS22605 0.86 -0.3 629,424 - -0.1 629,433 + +1.1 629,435 + +0.4 629,436 - -1.3 629,436 - -1.3 629,436 - -0.0 629,554 + -2.4 629,630 - +0.5 629,638 - +0.3 629,692 + -0.1
Or see this region's nucleotide sequence