Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21195 and BPHYT_RS21200 are separated by 123 nucleotides BPHYT_RS21200 and BPHYT_RS21205 overlap by 7 nucleotides BPHYT_RS21205 and BPHYT_RS21210 are separated by 116 nucleotides
BPHYT_RS21195: BPHYT_RS21195 - hypothetical protein, at 317,496 to 318,581
_RS21195
BPHYT_RS21200: BPHYT_RS21200 - hypothetical protein, at 318,705 to 319,337
_RS21200
BPHYT_RS21205: BPHYT_RS21205 - high-affinity nickel-transporter, at 319,331 to 320,455
_RS21205
BPHYT_RS21210: BPHYT_RS21210 - hypothetical protein, at 320,572 to 321,891
_RS21210
Position (kb) 319
320
321 Strain fitness (log2 ratio) -1
0
1
2 at 318.390 kb on + strand, within BPHYT_RS21195 at 318.484 kb on - strand at 318.584 kb on - strand at 319.014 kb on + strand, within BPHYT_RS21200 at 319.106 kb on + strand, within BPHYT_RS21200 at 319.229 kb on - strand, within BPHYT_RS21200 at 319.304 kb on + strand at 319.766 kb on - strand, within BPHYT_RS21205 at 319.899 kb on + strand, within BPHYT_RS21205 at 319.900 kb on - strand, within BPHYT_RS21205 at 320.050 kb on - strand, within BPHYT_RS21205 at 320.211 kb on + strand, within BPHYT_RS21205 at 320.211 kb on + strand, within BPHYT_RS21205 at 320.451 kb on + strand at 320.606 kb on + strand at 320.618 kb on + strand at 320.618 kb on + strand at 320.696 kb on + strand at 320.696 kb on + strand at 320.697 kb on - strand at 320.697 kb on - strand at 320.735 kb on + strand, within BPHYT_RS21210 at 320.996 kb on + strand, within BPHYT_RS21210 at 321.208 kb on - strand, within BPHYT_RS21210 at 321.407 kb on - strand, within BPHYT_RS21210 at 321.422 kb on + strand, within BPHYT_RS21210 at 321.422 kb on + strand, within BPHYT_RS21210 at 321.423 kb on - strand, within BPHYT_RS21210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 318,390 + BPHYT_RS21195 0.82 -0.7 318,484 - -0.4 318,584 - +0.2 319,014 + BPHYT_RS21200 0.49 +1.4 319,106 + BPHYT_RS21200 0.63 +1.1 319,229 - BPHYT_RS21200 0.83 +0.0 319,304 + +0.4 319,766 - BPHYT_RS21205 0.39 +0.9 319,899 + BPHYT_RS21205 0.50 -0.2 319,900 - BPHYT_RS21205 0.51 -0.5 320,050 - BPHYT_RS21205 0.64 +1.1 320,211 + BPHYT_RS21205 0.78 -0.4 320,211 + BPHYT_RS21205 0.78 -1.6 320,451 + -0.3 320,606 + +0.5 320,618 + -1.0 320,618 + -0.1 320,696 + -1.0 320,696 + -0.2 320,697 - +0.6 320,697 - -0.1 320,735 + BPHYT_RS21210 0.12 -0.9 320,996 + BPHYT_RS21210 0.32 -0.2 321,208 - BPHYT_RS21210 0.48 -0.5 321,407 - BPHYT_RS21210 0.63 +2.7 321,422 + BPHYT_RS21210 0.64 +0.0 321,422 + BPHYT_RS21210 0.64 -0.6 321,423 - BPHYT_RS21210 0.64 -0.1
Or see this region's nucleotide sequence