Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15175 and BPHYT_RS15180 overlap by 4 nucleotides BPHYT_RS15180 and BPHYT_RS15185 overlap by 1 nucleotides BPHYT_RS15185 and BPHYT_RS15190 are separated by 3 nucleotides BPHYT_RS15190 and BPHYT_RS15195 overlap by 26 nucleotides BPHYT_RS15195 and BPHYT_RS15200 overlap by 17 nucleotides
BPHYT_RS15175: BPHYT_RS15175 - AMP-dependent synthetase, at 3,453,510 to 3,455,216
_RS15175
BPHYT_RS15180: BPHYT_RS15180 - membrane protein, at 3,455,213 to 3,455,875
_RS15180
BPHYT_RS15185: BPHYT_RS15185 - acyl carrier protein, at 3,455,875 to 3,456,126
_RS15185
BPHYT_RS15190: BPHYT_RS15190 - acyl carrier protein, at 3,456,130 to 3,456,429
_RS15190
BPHYT_RS15195: BPHYT_RS15195 - glycerol acyltransferase, at 3,456,404 to 3,457,198
_RS15195
BPHYT_RS15200: BPHYT_RS15200 - hypothetical protein, at 3,457,182 to 3,457,964
_RS15200
Position (kb) 3456
3457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3455.154 kb on + strand at 3455.164 kb on + strand at 3455.164 kb on + strand at 3455.164 kb on + strand at 3455.165 kb on - strand at 3455.165 kb on - strand at 3455.301 kb on + strand, within BPHYT_RS15180 at 3455.302 kb on - strand, within BPHYT_RS15180 at 3455.302 kb on - strand, within BPHYT_RS15180 at 3455.320 kb on - strand, within BPHYT_RS15180 at 3455.358 kb on + strand, within BPHYT_RS15180 at 3455.419 kb on + strand, within BPHYT_RS15180 at 3455.419 kb on + strand, within BPHYT_RS15180 at 3455.420 kb on - strand, within BPHYT_RS15180 at 3456.132 kb on - strand at 3456.132 kb on - strand at 3456.263 kb on + strand, within BPHYT_RS15190 at 3456.264 kb on - strand, within BPHYT_RS15190 at 3456.448 kb on + strand at 3456.478 kb on + strand at 3456.742 kb on + strand, within BPHYT_RS15195 at 3456.742 kb on + strand, within BPHYT_RS15195 at 3456.743 kb on - strand, within BPHYT_RS15195 at 3456.743 kb on - strand, within BPHYT_RS15195 at 3456.743 kb on - strand, within BPHYT_RS15195 at 3456.744 kb on + strand, within BPHYT_RS15195 at 3456.744 kb on + strand, within BPHYT_RS15195 at 3456.744 kb on + strand, within BPHYT_RS15195 at 3456.745 kb on - strand, within BPHYT_RS15195 at 3456.807 kb on + strand, within BPHYT_RS15195 at 3456.905 kb on + strand, within BPHYT_RS15195 at 3456.905 kb on + strand, within BPHYT_RS15195 at 3456.915 kb on + strand, within BPHYT_RS15195 at 3456.916 kb on - strand, within BPHYT_RS15195 at 3456.916 kb on - strand, within BPHYT_RS15195 at 3456.916 kb on - strand, within BPHYT_RS15195 at 3456.916 kb on - strand, within BPHYT_RS15195 at 3457.175 kb on + strand at 3457.176 kb on - strand at 3457.176 kb on - strand at 3457.176 kb on - strand at 3457.180 kb on - strand at 3457.180 kb on - strand at 3457.384 kb on + strand, within BPHYT_RS15200 at 3457.385 kb on - strand, within BPHYT_RS15200
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 3,455,154 + -1.0 3,455,164 + +0.0 3,455,164 + -0.1 3,455,164 + +1.1 3,455,165 - -0.3 3,455,165 - +0.3 3,455,301 + BPHYT_RS15180 0.13 +0.9 3,455,302 - BPHYT_RS15180 0.13 -0.8 3,455,302 - BPHYT_RS15180 0.13 +0.0 3,455,320 - BPHYT_RS15180 0.16 -1.5 3,455,358 + BPHYT_RS15180 0.22 +0.1 3,455,419 + BPHYT_RS15180 0.31 -0.2 3,455,419 + BPHYT_RS15180 0.31 -0.7 3,455,420 - BPHYT_RS15180 0.31 -0.6 3,456,132 - -0.3 3,456,132 - -0.3 3,456,263 + BPHYT_RS15190 0.44 -1.1 3,456,264 - BPHYT_RS15190 0.45 +0.0 3,456,448 + +0.2 3,456,478 + +0.6 3,456,742 + BPHYT_RS15195 0.43 +0.1 3,456,742 + BPHYT_RS15195 0.43 -1.9 3,456,743 - BPHYT_RS15195 0.43 -0.1 3,456,743 - BPHYT_RS15195 0.43 -0.3 3,456,743 - BPHYT_RS15195 0.43 +0.3 3,456,744 + BPHYT_RS15195 0.43 +0.1 3,456,744 + BPHYT_RS15195 0.43 -0.5 3,456,744 + BPHYT_RS15195 0.43 -0.7 3,456,745 - BPHYT_RS15195 0.43 +0.2 3,456,807 + BPHYT_RS15195 0.51 +0.4 3,456,905 + BPHYT_RS15195 0.63 -0.6 3,456,905 + BPHYT_RS15195 0.63 +0.2 3,456,915 + BPHYT_RS15195 0.64 -0.3 3,456,916 - BPHYT_RS15195 0.64 -0.2 3,456,916 - BPHYT_RS15195 0.64 +0.3 3,456,916 - BPHYT_RS15195 0.64 -1.2 3,456,916 - BPHYT_RS15195 0.64 -0.2 3,457,175 + -2.3 3,457,176 - +1.1 3,457,176 - +1.8 3,457,176 - +0.9 3,457,180 - -0.5 3,457,180 - -0.1 3,457,384 + BPHYT_RS15200 0.26 +1.2 3,457,385 - BPHYT_RS15200 0.26 -0.1
Or see this region's nucleotide sequence