Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06130

Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06125 and BPHYT_RS06130 are separated by 136 nucleotidesBPHYT_RS06130 and BPHYT_RS06135 are separated by 92 nucleotidesBPHYT_RS06135 and BPHYT_RS06140 overlap by 11 nucleotidesBPHYT_RS06140 and BPHYT_RS06145 are separated by 15 nucleotides BPHYT_RS06125: BPHYT_RS06125 - phosphoribosylglycinamide formyltransferase, at 1,395,451 to 1,396,665 _RS06125 BPHYT_RS06130: BPHYT_RS06130 - hypothetical protein, at 1,396,802 to 1,397,014 _RS06130 BPHYT_RS06135: BPHYT_RS06135 - hypothetical protein, at 1,397,107 to 1,397,475 _RS06135 BPHYT_RS06140: BPHYT_RS06140 - hypothetical protein, at 1,397,465 to 1,397,725 _RS06140 BPHYT_RS06145: BPHYT_RS06145 - acetolactate synthase, at 1,397,741 to 1,399,393 _RS06145 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1395.856 kb on + strand, within BPHYT_RS06125at 1395.856 kb on + strand, within BPHYT_RS06125at 1395.857 kb on - strand, within BPHYT_RS06125at 1396.126 kb on + strand, within BPHYT_RS06125at 1396.127 kb on - strand, within BPHYT_RS06125at 1396.127 kb on - strand, within BPHYT_RS06125at 1396.169 kb on - strand, within BPHYT_RS06125at 1396.304 kb on + strand, within BPHYT_RS06125at 1396.304 kb on + strand, within BPHYT_RS06125at 1396.304 kb on + strand, within BPHYT_RS06125at 1396.305 kb on - strand, within BPHYT_RS06125at 1396.305 kb on - strand, within BPHYT_RS06125at 1396.305 kb on - strand, within BPHYT_RS06125at 1396.420 kb on - strand, within BPHYT_RS06125at 1396.457 kb on - strand, within BPHYT_RS06125at 1396.457 kb on - strand, within BPHYT_RS06125at 1396.663 kb on + strandat 1396.663 kb on + strandat 1396.792 kb on - strandat 1396.792 kb on - strandat 1396.797 kb on + strandat 1396.797 kb on + strandat 1396.797 kb on + strandat 1396.797 kb on + strandat 1396.798 kb on - strandat 1396.798 kb on - strandat 1396.802 kb on - strandat 1396.802 kb on - strandat 1397.086 kb on + strandat 1397.156 kb on + strand, within BPHYT_RS06135at 1397.227 kb on + strand, within BPHYT_RS06135at 1397.227 kb on + strand, within BPHYT_RS06135at 1397.227 kb on + strandat 1397.227 kb on + strand, within BPHYT_RS06135at 1397.228 kb on - strand, within BPHYT_RS06135at 1397.374 kb on + strand, within BPHYT_RS06135at 1397.410 kb on + strand, within BPHYT_RS06135at 1397.457 kb on + strandat 1397.457 kb on + strandat 1397.457 kb on + strandat 1397.579 kb on + strand, within BPHYT_RS06140at 1397.580 kb on - strand, within BPHYT_RS06140at 1397.582 kb on + strand, within BPHYT_RS06140at 1397.582 kb on + strand, within BPHYT_RS06140at 1397.582 kb on + strand, within BPHYT_RS06140at 1397.582 kb on + strand, within BPHYT_RS06140at 1397.582 kb on + strand, within BPHYT_RS06140at 1397.583 kb on - strand, within BPHYT_RS06140at 1397.583 kb on - strand, within BPHYT_RS06140at 1397.631 kb on + strand, within BPHYT_RS06140at 1397.631 kb on + strand, within BPHYT_RS06140at 1397.632 kb on - strand, within BPHYT_RS06140at 1397.632 kb on - strand, within BPHYT_RS06140at 1397.720 kb on + strandat 1397.720 kb on + strandat 1397.793 kb on - strandat 1397.910 kb on - strand, within BPHYT_RS06145at 1397.991 kb on - strand, within BPHYT_RS06145

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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1,395,856 + BPHYT_RS06125 0.33 +0.3
1,395,856 + BPHYT_RS06125 0.33 +1.6
1,395,857 - BPHYT_RS06125 0.33 +0.4
1,396,126 + BPHYT_RS06125 0.56 +0.3
1,396,127 - BPHYT_RS06125 0.56 -0.1
1,396,127 - BPHYT_RS06125 0.56 -2.2
1,396,169 - BPHYT_RS06125 0.59 +0.6
1,396,304 + BPHYT_RS06125 0.70 +0.0
1,396,304 + BPHYT_RS06125 0.70 -0.0
1,396,304 + BPHYT_RS06125 0.70 -0.2
1,396,305 - BPHYT_RS06125 0.70 +2.1
1,396,305 - BPHYT_RS06125 0.70 -0.2
1,396,305 - BPHYT_RS06125 0.70 -1.0
1,396,420 - BPHYT_RS06125 0.80 +0.5
1,396,457 - BPHYT_RS06125 0.83 +0.5
1,396,457 - BPHYT_RS06125 0.83 -0.1
1,396,663 + -0.4
1,396,663 + -0.4
1,396,792 - +0.3
1,396,792 - +1.6
1,396,797 + +1.3
1,396,797 + +0.1
1,396,797 + -0.9
1,396,797 + -0.1
1,396,798 - -0.2
1,396,798 - +0.8
1,396,802 - +0.5
1,396,802 - -0.2
1,397,086 + +0.2
1,397,156 + BPHYT_RS06135 0.13 +1.0
1,397,227 + BPHYT_RS06135 0.33 +0.1
1,397,227 + BPHYT_RS06135 0.33 +1.2
1,397,227 + +2.1
1,397,227 + BPHYT_RS06135 0.33 +0.0
1,397,228 - BPHYT_RS06135 0.33 +1.6
1,397,374 + BPHYT_RS06135 0.72 +1.1
1,397,410 + BPHYT_RS06135 0.82 -1.2
1,397,457 + +0.7
1,397,457 + -0.5
1,397,457 + -0.4
1,397,579 + BPHYT_RS06140 0.44 -0.5
1,397,580 - BPHYT_RS06140 0.44 +0.1
1,397,582 + BPHYT_RS06140 0.45 -1.0
1,397,582 + BPHYT_RS06140 0.45 -0.2
1,397,582 + BPHYT_RS06140 0.45 -0.6
1,397,582 + BPHYT_RS06140 0.45 +0.3
1,397,582 + BPHYT_RS06140 0.45 -0.9
1,397,583 - BPHYT_RS06140 0.45 -0.7
1,397,583 - BPHYT_RS06140 0.45 +0.1
1,397,631 + BPHYT_RS06140 0.64 +2.0
1,397,631 + BPHYT_RS06140 0.64 +1.9
1,397,632 - BPHYT_RS06140 0.64 -0.7
1,397,632 - BPHYT_RS06140 0.64 +0.1
1,397,720 + -0.2
1,397,720 + +0.5
1,397,793 - +2.5
1,397,910 - BPHYT_RS06145 0.10 -0.5
1,397,991 - BPHYT_RS06145 0.15 +0.0

Or see this region's nucleotide sequence