Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00895 and BPHYT_RS00900 are separated by 38 nucleotides BPHYT_RS00900 and BPHYT_RS00905 overlap by 4 nucleotides
BPHYT_RS00895: BPHYT_RS00895 - MFS transporter, at 205,436 to 206,818
_RS00895
BPHYT_RS00900: BPHYT_RS00900 - beta-lactamase, at 206,857 to 207,183
_RS00900
BPHYT_RS00905: BPHYT_RS00905 - ABC transporter substrate-binding protein, at 207,180 to 208,517
_RS00905
Position (kb) 206
207
208 Strain fitness (log2 ratio) -1
0
1 at 205.935 kb on + strand, within BPHYT_RS00895 at 206.014 kb on - strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.390 kb on - strand, within BPHYT_RS00895 at 206.432 kb on - strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.537 kb on + strand, within BPHYT_RS00895 at 206.538 kb on - strand, within BPHYT_RS00895 at 206.690 kb on + strand at 207.099 kb on - strand, within BPHYT_RS00900 at 207.700 kb on + strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.701 kb on - strand, within BPHYT_RS00905 at 207.717 kb on + strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.718 kb on - strand, within BPHYT_RS00905 at 207.724 kb on + strand, within BPHYT_RS00905 at 207.811 kb on - strand, within BPHYT_RS00905 at 207.835 kb on + strand, within BPHYT_RS00905 at 207.835 kb on + strand, within BPHYT_RS00905 at 207.836 kb on - strand, within BPHYT_RS00905 at 207.836 kb on - strand, within BPHYT_RS00905 at 207.859 kb on + strand, within BPHYT_RS00905 at 207.859 kb on + strand, within BPHYT_RS00905 at 207.859 kb on + strand, within BPHYT_RS00905 at 207.877 kb on + strand, within BPHYT_RS00905 at 208.076 kb on - strand, within BPHYT_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 205,935 + BPHYT_RS00895 0.36 -1.4 206,014 - BPHYT_RS00895 0.42 -0.0 206,193 + BPHYT_RS00895 0.55 -0.8 206,193 + BPHYT_RS00895 0.55 +1.5 206,390 - BPHYT_RS00895 0.69 -0.8 206,432 - BPHYT_RS00895 0.72 +0.0 206,537 + BPHYT_RS00895 0.80 -0.1 206,537 + BPHYT_RS00895 0.80 -0.4 206,538 - BPHYT_RS00895 0.80 +0.4 206,690 + -0.3 207,099 - BPHYT_RS00900 0.74 -1.0 207,700 + BPHYT_RS00905 0.39 +0.3 207,701 - BPHYT_RS00905 0.39 -0.8 207,701 - BPHYT_RS00905 0.39 -0.6 207,717 + BPHYT_RS00905 0.40 -0.5 207,718 - BPHYT_RS00905 0.40 +0.5 207,718 - BPHYT_RS00905 0.40 -1.4 207,724 + BPHYT_RS00905 0.41 -0.8 207,811 - BPHYT_RS00905 0.47 +0.3 207,835 + BPHYT_RS00905 0.49 -1.3 207,835 + BPHYT_RS00905 0.49 +0.3 207,836 - BPHYT_RS00905 0.49 +0.3 207,836 - BPHYT_RS00905 0.49 +0.2 207,859 + BPHYT_RS00905 0.51 +0.8 207,859 + BPHYT_RS00905 0.51 -0.4 207,859 + BPHYT_RS00905 0.51 -0.9 207,877 + BPHYT_RS00905 0.52 -0.2 208,076 - BPHYT_RS00905 0.67 +0.6
Or see this region's nucleotide sequence